RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 EFCAB2Q5VUJ9 269 aa9.37□□□□□ -0.91
VCAN-202ENST00000342785 FGD6Q6ZV73 1430 aa9.37□□□□□ -0.91
VCAN-202ENST00000342785 SYNJ1O43426 1573 aa9.36□□□□□ -0.91
VCAN-202ENST00000342785 ROCK2O75116 1388 aaKnown RBP9.36□□□□□ -0.91
VCAN-202ENST00000342785 BECN1Q14457 450 aa9.36□□□□□ -0.91
VCAN-202ENST00000342785 NLRP13Q86W25 1043 aa9.36□□□□□ -0.91
VCAN-202ENST00000342785 RRBP1Q9P2E9 1410 aaKnown RBP9.36□□□□□ -0.91
VCAN-202ENST00000342785 LRRC9Q6ZRR7 1453 aa9.35□□□□□ -0.91
VCAN-202ENST00000342785 ANP32BQ92688 251 aaKnown RBP9.35□□□□□ -0.91
VCAN-202ENST00000342785 RSPH4AQ5TD94 716 aa9.34□□□□□ -0.91
VCAN-202ENST00000342785 FTSJ3Q8IY81 847 aaKnown RBP9.34□□□□□ -0.91
VCAN-202ENST00000342785 ZNF644Q9H582 1327 aaPredicted RBP9.34□□□□□ -0.91
VCAN-202ENST00000342785 MYH16Q9H6N6 1097 aa9.34□□□□□ -0.91
VCAN-202ENST00000342785 CFTRP13569 1480 aa9.33□□□□□ -0.92
VCAN-202ENST00000342785 MAPK8IP3Q9UPT6 1336 aa9.33□□□□□ -0.92
VCAN-202ENST00000342785 POGKQ9P215 609 aa9.33□□□□□ -0.92
VCAN-202ENST00000342785 MYOM3Q5VTT5 1437 aa9.33□□□□□ -0.92
VCAN-202ENST00000342785 UACAQ9BZF9 1416 aa9.33□□□□□ -0.92
VCAN-202ENST00000342785 U2SURPO15042 1029 aaKnown RBP9.33□□□□□ -0.92
VCAN-202ENST00000342785 GGT6Q6P531 493 aa9.32□□□□□ -0.92
VCAN-202ENST00000342785 KANK1Q14678 1352 aa9.32□□□□□ -0.92
VCAN-202ENST00000342785 ERICH3Q5RHP9 1530 aa9.32□□□□□ -0.92
VCAN-202ENST00000342785 MORC1Q86VD1 984 aa9.32□□□□□ -0.92
VCAN-202ENST00000342785 GAPVD1Q14C86 1478 aa9.31□□□□□ -0.92
VCAN-202ENST00000342785 ZBED9Q6R2W3 1325 aa9.31□□□□□ -0.92
VCAN-202ENST00000342785 PDE3BQ13370 1112 aa9.3□□□□□ -0.92
VCAN-202ENST00000342785 TCERG1O14776 1098 aaKnown RBP9.3□□□□□ -0.92
VCAN-202ENST00000342785 CASKIN1Q8WXD9 1431 aa9.3□□□□□ -0.92
VCAN-202ENST00000342785 SAFB2Q14151 953 aaKnown RBP eCLIP9.3□□□□□ -0.92
VCAN-202ENST00000342785 KIF3BO15066 747 aa9.3□□□□□ -0.92
VCAN-202ENST00000342785 USP47Q96K76 1375 aa9.3□□□□□ -0.92
VCAN-202ENST00000342785 WASHC2AQ641Q2 1341 aa9.29□□□□□ -0.92
VCAN-202ENST00000342785 KIF7Q2M1P5 1343 aa9.29□□□□□ -0.92
VCAN-202ENST00000342785 MYBBP1AQ9BQG0 1328 aaKnown RBP9.28□□□□□ -0.92
VCAN-202ENST00000342785 CCDC7Q96M83 1385 aa9.28□□□□□ -0.92
VCAN-202ENST00000342785 DEKP35659 375 aaKnown RBP9.28□□□□□ -0.92
VCAN-202ENST00000342785 SRPK2P78362 688 aaKnown RBP9.27□□□□□ -0.92
VCAN-202ENST00000342785 KIF15Q9NS87 1388 aa9.27□□□□□ -0.92
VCAN-202ENST00000342785 GOLGA2Q08379 1002 aa9.27□□□□□ -0.93
VCAN-202ENST00000342785 PANK3Q9H999 370 aa9.27□□□□□ -0.93
VCAN-202ENST00000342785 MS4A1P11836 297 aa9.27□□□□□ -0.93
VCAN-202ENST00000342785 SPAG9O60271 1321 aaKnown RBP9.27□□□□□ -0.93
VCAN-202ENST00000342785 NCOA2Q15596 1464 aa9.27□□□□□ -0.93
VCAN-202ENST00000342785 CCDC144AA2RUR9 1427 aa9.26□□□□□ -0.93
VCAN-202ENST00000342785 U2AF1L5P0DN76 240 aaPredicted RBP9.26□□□□□ -0.93
VCAN-202ENST00000342785 U2AF1Q01081 240 aaKnown RBP eCLIP9.26□□□□□ -0.93
VCAN-202ENST00000342785 IPO9Q96P70 1041 aaKnown RBP9.25□□□□□ -0.93
VCAN-202ENST00000342785 PTPRGP23470 1445 aa9.25□□□□□ -0.93
VCAN-202ENST00000342785 STK26Q9P289 416 aa9.25□□□□□ -0.93
VCAN-202ENST00000342785 CUX1P39880 1505 aa9.24□□□□□ -0.93
VCAN-202ENST00000342785 AQRO60306 1485 aaKnown RBP eCLIP9.24□□□□□ -0.93
VCAN-202ENST00000342785 TOP2BQ02880 1626 aa9.24□□□□□ -0.93
VCAN-202ENST00000342785 C14orf37Q86TY3 774 aa9.24□□□□□ -0.93
VCAN-202ENST00000342785 EXOC6Q8TAG9 804 aa9.24□□□□□ -0.93
VCAN-202ENST00000342785 PLEKHG5O94827 1062 aa9.23□□□□□ -0.93
VCAN-202ENST00000342785 CCDC146Q8IYE0 955 aa9.23□□□□□ -0.93
VCAN-202ENST00000342785 NBPF8Q3BBV2 869 aa9.23□□□□□ -0.93
VCAN-202ENST00000342785 RTN4Q9NQC3 1192 aaKnown RBP9.23□□□□□ -0.93
VCAN-202ENST00000342785 ARID4BQ4LE39 1312 aaPredicted RBP9.22□□□□□ -0.93
VCAN-202ENST00000342785 GOLGA6L22H0YM25 854 aa9.22□□□□□ -0.93
VCAN-202ENST00000342785 PLIN1O60240 522 aa9.22□□□□□ -0.93
VCAN-202ENST00000342785 FYCO1Q9BQS8 1478 aa9.22□□□□□ -0.93
VCAN-202ENST00000342785 RRP1P56182 461 aaKnown RBP9.22□□□□□ -0.93
VCAN-202ENST00000342785 CHMP4BQ9H444 224 aaKnown RBP9.22□□□□□ -0.93
VCAN-202ENST00000342785 CNTLNQ9NXG0 1405 aa9.22□□□□□ -0.93
VCAN-202ENST00000342785 HFM1A2PYH4 1435 aa9.21□□□□□ -0.93
VCAN-202ENST00000342785 PNNQ9H307 717 aaKnown RBP9.21□□□□□ -0.93
VCAN-202ENST00000342785 ANKRD50Q9ULJ7 1429 aa9.21□□□□□ -0.94
VCAN-202ENST00000342785 ZBTB7CA1YPR0 619 aa9.2□□□□□ -0.94
VCAN-202ENST00000342785 MLECQ14165 292 aa9.2□□□□□ -0.94
VCAN-202ENST00000342785 CLUAP1Q96AJ1 413 aa9.2□□□□□ -0.94
VCAN-202ENST00000342785 FANCIQ9NVI1 1328 aa9.2□□□□□ -0.94
VCAN-202ENST00000342785 EIF3AQ14152 1382 aaKnown RBP9.2□□□□□ -0.94
VCAN-202ENST00000342785 TRAK1Q9UPV9 953 aa9.2□□□□□ -0.94
VCAN-202ENST00000342785 PDE4AP27815 886 aa9.2□□□□□ -0.94
VCAN-202ENST00000342785 RWDD1Q9H446 243 aaPredicted RBP9.19□□□□□ -0.94
VCAN-202ENST00000342785 NESP48681 1621 aa9.19□□□□□ -0.94
VCAN-202ENST00000342785 TRIM44Q96DX7 344 aaPredicted RBP9.19□□□□□ -0.94
VCAN-202ENST00000342785 POLA1P09884 1462 aaPredicted RBP9.18□□□□□ -0.94
VCAN-202ENST00000342785 NCLP19338 710 aaKnown RBP9.18□□□□□ -0.94
VCAN-202ENST00000342785 HDGFL2Q7Z4V5 671 aaPredicted RBP9.18□□□□□ -0.94
VCAN-202ENST00000342785 CENPJQ9HC77 1338 aaPredicted RBP9.18□□□□□ -0.94
VCAN-202ENST00000342785 CCDC184Q52MB2 194 aa9.18□□□□□ -0.94
VCAN-202ENST00000342785 IPO8O15397 1037 aaKnown RBP9.18□□□□□ -0.94
VCAN-202ENST00000342785 NUTM2DQ5VT03 806 aaPredicted RBP9.18□□□□□ -0.94
VCAN-202ENST00000342785 APAF1O14727 1248 aa9.18□□□□□ -0.94
VCAN-202ENST00000342785 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.18□□□□□ -0.94
VCAN-202ENST00000342785 SOX12O15370 315 aa9.17□□□□□ -0.94
VCAN-202ENST00000342785 HMGXB3Q12766 1538 aa9.17□□□□□ -0.94
VCAN-202ENST00000342785 TIAM1Q13009 1591 aa9.17□□□□□ -0.94
VCAN-202ENST00000342785 WASHC2CQ9Y4E1 1318 aa9.17□□□□□ -0.94
VCAN-202ENST00000342785 SLKQ9H2G2 1235 aaPredicted RBP9.17□□□□□ -0.94
VCAN-202ENST00000342785 RRP7AQ9Y3A4 280 aaKnown RBP9.17□□□□□ -0.94
VCAN-202ENST00000342785 CRBNQ96SW2 442 aa9.17□□□□□ -0.94
VCAN-202ENST00000342785 SPRYD3Q8NCJ5 442 aa9.16□□□□□ -0.94
VCAN-202ENST00000342785 NAIPQ13075 1403 aa9.16□□□□□ -0.94
VCAN-202ENST00000342785 TOPBP1Q92547 1522 aa9.16□□□□□ -0.94
VCAN-202ENST00000342785 CASC1Q6TDU7 716 aa9.16□□□□□ -0.94
VCAN-202ENST00000342785 ITPRIPQ8IWB1 547 aa9.16□□□□□ -0.94
VCAN-202ENST00000342785 HSP90AB1P08238 724 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms