RNA–Protein interactions for RNA: ENST00000324938.9

LIMS2-201, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS2, Length 2,111 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-201ENST00000324938 ABCA8O94911 1581 aa30.68■■■□□ 2.5
LIMS2-201ENST00000324938 ABCC5O15440 1437 aa30.68■■■□□ 2.5
LIMS2-201ENST00000324938 KIF14Q15058 1648 aa30.67■■■□□ 2.5
LIMS2-201ENST00000324938 KDM5BQ9UGL1 1544 aa30.66■■■□□ 2.5
LIMS2-201ENST00000324938 ADGBQ8N7X0 1667 aa30.61■■■□□ 2.49
LIMS2-201ENST00000324938 CAMSAP2Q08AD1 1489 aa30.61■■■□□ 2.49
LIMS2-201ENST00000324938 CROCC2H7BZ55 1655 aa30.6■■■□□ 2.49
LIMS2-201ENST00000324938 GPATCH8Q9UKJ3 1502 aaKnown RBP30.59■■■□□ 2.49
LIMS2-201ENST00000324938 ZNF644Q9H582 1327 aaPredicted RBP30.57■■■□□ 2.48
LIMS2-201ENST00000324938 TRIM52Q96A61 297 aa30.56■■■□□ 2.48
LIMS2-201ENST00000324938 CHD1O14646 1710 aa30.55■■■□□ 2.48
LIMS2-201ENST00000324938 CDC42BPAQ5VT25 1732 aa30.54■■■□□ 2.48
LIMS2-201ENST00000324938 MPHOSPH9Q99550 1183 aa30.51■■■□□ 2.47
LIMS2-201ENST00000324938 CFDP1Q9UEE9 299 aaPredicted RBP30.49■■■□□ 2.47
LIMS2-201ENST00000324938 ATP10BO94823 1461 aa30.49■■■□□ 2.47
LIMS2-201ENST00000324938 ADGRL2O95490 1459 aa30.48■■■□□ 2.47
LIMS2-201ENST00000324938 ABCC10Q5T3U5 1492 aa30.47■■■□□ 2.47
LIMS2-201ENST00000324938 DDX10Q13206 875 aaKnown RBP30.46■■■□□ 2.47
LIMS2-201ENST00000324938 SHROOM2Q13796 1616 aa30.42■■■□□ 2.46
LIMS2-201ENST00000324938 NCOA1Q15788 1441 aa30.42■■■□□ 2.46
LIMS2-201ENST00000324938 PLEKHD1A6NEE1 506 aa30.4■■■□□ 2.46
LIMS2-201ENST00000324938 HIRIP3Q9BW71 556 aaPredicted RBP30.39■■■□□ 2.46
LIMS2-201ENST00000324938 ANKRD30BQ9BXX2 1392 aa30.38■■■□□ 2.45
LIMS2-201ENST00000324938 PTPRGP23470 1445 aa30.37■■■□□ 2.45
LIMS2-201ENST00000324938 RPRD2Q5VT52 1461 aaKnown RBP30.37■■■□□ 2.45
LIMS2-201ENST00000324938 SHANK2Q9UPX8 1470 aa30.36■■■□□ 2.45
LIMS2-201ENST00000324938 PZPP20742 1482 aa30.34■■■□□ 2.45
LIMS2-201ENST00000324938 ZNF777Q9ULD5 760 aaPredicted RBP30.32■■■□□ 2.44
LIMS2-201ENST00000324938 ANKRD30AQ9BXX3 1397 aa30.31■■■□□ 2.44
LIMS2-201ENST00000324938 FOXD1Q16676 465 aa30.3■■■□□ 2.44
LIMS2-201ENST00000324938 TEX14Q8IWB6 1497 aa30.3■■■□□ 2.44
LIMS2-201ENST00000324938 SLC4A1APQ9BWU0 796 aaKnown RBP30.27■■■□□ 2.44
LIMS2-201ENST00000324938 ARHGEF5Q12774 1597 aa30.27■■■□□ 2.44
LIMS2-201ENST00000324938 PREX2Q70Z35 1606 aa30.27■■■□□ 2.44
LIMS2-201ENST00000324938 L3MBTL2Q969R5 705 aa30.25■■■□□ 2.43
LIMS2-201ENST00000324938 CDC42BPBQ9Y5S2 1711 aa30.25■■■□□ 2.43
LIMS2-201ENST00000324938 KCNH8Q96L42 1107 aa30.24■■■□□ 2.43
LIMS2-201ENST00000324938 C9orf84Q5VXU9 1444 aa30.23■■■□□ 2.43
LIMS2-201ENST00000324938 ANKRD50Q9ULJ7 1429 aa30.21■■■□□ 2.43
LIMS2-201ENST00000324938 CCER2I3L3R5 266 aa30.19■■■□□ 2.42
LIMS2-201ENST00000324938 SAMD9LQ8IVG5 1584 aa30.18■■■□□ 2.42
LIMS2-201ENST00000324938 KIAA1107Q9UPP5 1409 aa30.18■■■□□ 2.42
LIMS2-201ENST00000324938 ANP32CO43423 234 aa30.18■■■□□ 2.42
LIMS2-201ENST00000324938 HSPA5P11021 654 aaKnown RBP30.16■■■□□ 2.42
LIMS2-201ENST00000324938 KDM5DQ9BY66 1539 aa30.15■■■□□ 2.42
LIMS2-201ENST00000324938 ABCC2Q92887 1545 aa30.15■■■□□ 2.42
LIMS2-201ENST00000324938 ERCC6L2Q5T890 1561 aa30.15■■■□□ 2.42
LIMS2-201ENST00000324938 MBD5Q9P267 1494 aa30.14■■■□□ 2.42
LIMS2-201ENST00000324938 EIF4G2P78344 907 aaKnown RBP eCLIP30.14■■■□□ 2.42
LIMS2-201ENST00000324938 PELP1Q8IZL8 1130 aaKnown RBP30.14■■■□□ 2.42
LIMS2-201ENST00000324938 TTC37Q6PGP7 1564 aa30.1■■■□□ 2.41
LIMS2-201ENST00000324938 POLR1AO95602 1720 aaPredicted RBP30.1■■■□□ 2.41
LIMS2-201ENST00000324938 CCDC141Q6ZP82 1450 aa30.1■■■□□ 2.41
LIMS2-201ENST00000324938 CLASP1Q7Z460 1538 aa30.1■■■□□ 2.41
LIMS2-201ENST00000324938 WASHC2AQ641Q2 1341 aa30.07■■■□□ 2.4
LIMS2-201ENST00000324938 MYO5CQ9NQX4 1742 aa30.07■■■□□ 2.4
LIMS2-201ENST00000324938 TSPY4P0CV99 314 aa30.07■■■□□ 2.4
LIMS2-201ENST00000324938 TSPY10P0CW01 314 aa30.07■■■□□ 2.4
LIMS2-201ENST00000324938 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.06■■■□□ 2.4
LIMS2-201ENST00000324938 NBPF8Q3BBV2 869 aa30.06■■■□□ 2.4
LIMS2-201ENST00000324938 KIF15Q9NS87 1388 aa30.04■■■□□ 2.4
LIMS2-201ENST00000324938 MAST1Q9Y2H9 1570 aa30.04■■■□□ 2.4
LIMS2-201ENST00000324938 PKD2Q13563 968 aa30.03■■■□□ 2.4
LIMS2-201ENST00000324938 HNRNPMP52272 730 aaKnown RBP eCLIP30.02■■■□□ 2.4
LIMS2-201ENST00000324938 ARHGAP5Q13017 1502 aa30■■■□□ 2.39
LIMS2-201ENST00000324938 SYCP2Q9BX26 1530 aa30■■■□□ 2.39
LIMS2-201ENST00000324938 NUP155O75694 1391 aa30■■■□□ 2.39
LIMS2-201ENST00000324938 RSPH4AQ5TD94 716 aa29.99■■■□□ 2.39
LIMS2-201ENST00000324938 SPATA31E1Q6ZUB1 1445 aa29.99■■■□□ 2.39
LIMS2-201ENST00000324938 ZCCHC11Q5TAX3 1644 aaKnown RBP29.97■■■□□ 2.39
LIMS2-201ENST00000324938 CNTLNQ9NXG0 1405 aa29.97■■■□□ 2.39
LIMS2-201ENST00000324938 UHRF1BP1LA0JNW5 1464 aa29.95■■■□□ 2.39
LIMS2-201ENST00000324938 CCDC7Q96M83 1385 aa29.94■■■□□ 2.38
LIMS2-201ENST00000324938 PLEKHH2Q8IVE3 1493 aa29.93■■■□□ 2.38
LIMS2-201ENST00000324938 PLXNC1O60486 1568 aa29.92■■■□□ 2.38
LIMS2-201ENST00000324938 ARHGEF12Q9NZN5 1544 aa29.92■■■□□ 2.38
LIMS2-201ENST00000324938 UNC13BO14795 1591 aa29.91■■■□□ 2.38
LIMS2-201ENST00000324938 FAM135AQ9P2D6 1515 aa29.88■■■□□ 2.37
LIMS2-201ENST00000324938 SUPT16HQ9Y5B9 1047 aaKnown RBP29.88■■■□□ 2.37
LIMS2-201ENST00000324938 UHRF1BP1Q6BDS2 1440 aa29.88■■■□□ 2.37
LIMS2-201ENST00000324938 C11orf95C9JLR9 678 aaPredicted RBP29.87■■■□□ 2.37
LIMS2-201ENST00000324938 KDM5CP41229 1560 aa29.84■■■□□ 2.37
LIMS2-201ENST00000324938 RALGAPBQ86X10 1494 aa29.82■■■□□ 2.36
LIMS2-201ENST00000324938 PLCH2O75038 1416 aa29.81■■■□□ 2.36
LIMS2-201ENST00000324938 KIF7Q2M1P5 1343 aa29.79■■■□□ 2.36
LIMS2-201ENST00000324938 IQGAP3Q86VI3 1631 aa29.79■■■□□ 2.36
LIMS2-201ENST00000324938 BCORL1Q5H9F3 1711 aa29.78■■■□□ 2.36
LIMS2-201ENST00000324938 ABCC1P33527 1531 aa29.77■■■□□ 2.36
LIMS2-201ENST00000324938 USP47Q96K76 1375 aa29.77■■■□□ 2.36
LIMS2-201ENST00000324938 DUOX2Q9NRD8 1548 aa29.76■■■□□ 2.35
LIMS2-201ENST00000324938 MAGI2Q86UL8 1455 aa29.72■■■□□ 2.35
LIMS2-201ENST00000324938 ARAP3Q8WWN8 1544 aa29.72■■■□□ 2.35
LIMS2-201ENST00000324938 ZNF326Q5BKZ1 582 aaKnown RBP29.71■■■□□ 2.35
LIMS2-201ENST00000324938 ERBINQ96RT1 1412 aa29.69■■■□□ 2.34
LIMS2-201ENST00000324938 PRKRIP1Q9H875 184 aaPredicted RBP29.68■■■□□ 2.34
LIMS2-201ENST00000324938 EFCAB2Q5VUJ9 269 aa29.66■■■□□ 2.34
LIMS2-201ENST00000324938 ARID4BQ4LE39 1312 aaPredicted RBP29.65■■■□□ 2.34
LIMS2-201ENST00000324938 CCDC144AA2RUR9 1427 aa29.64■■■□□ 2.34
LIMS2-201ENST00000324938 TRPM1Q7Z4N2 1603 aa29.62■■■□□ 2.33
LIMS2-201ENST00000324938 PLA2R1Q13018 1463 aa29.62■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms