RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 AKNAQ7Z591 1439 aa22.82■■□□□ 1.24
USHBP1-202ENST00000324554 HIRIP3Q9BW71 556 aaPredicted RBP22.81■■□□□ 1.24
USHBP1-202ENST00000324554 RRP7BPQ9NSQ0 103 aa22.81■■□□□ 1.24
USHBP1-202ENST00000324554 PLEKHD1A6NEE1 506 aa22.8■■□□□ 1.24
USHBP1-202ENST00000324554 SHROOM2Q13796 1616 aa22.8■■□□□ 1.24
USHBP1-202ENST00000324554 TROQ12816 1431 aaPredicted RBP22.79■■□□□ 1.24
USHBP1-202ENST00000324554 ZNF777Q9ULD5 760 aaPredicted RBP22.78■■□□□ 1.24
USHBP1-202ENST00000324554 KDM5BQ9UGL1 1544 aa22.77■■□□□ 1.24
USHBP1-202ENST00000324554 KIF14Q15058 1648 aa22.77■■□□□ 1.24
USHBP1-202ENST00000324554 CLASP1Q7Z460 1538 aa22.76■■□□□ 1.23
USHBP1-202ENST00000324554 DENND4BO75064 1496 aaPredicted RBP22.76■■□□□ 1.23
USHBP1-202ENST00000324554 KDM6BO15054 1643 aa22.76■■□□□ 1.23
USHBP1-202ENST00000324554 CFDP1Q9UEE9 299 aaPredicted RBP22.73■■□□□ 1.23
USHBP1-202ENST00000324554 TRIM52Q96A61 297 aa22.68■■□□□ 1.22
USHBP1-202ENST00000324554 GPATCH8Q9UKJ3 1502 aaKnown RBP22.66■■□□□ 1.22
USHBP1-202ENST00000324554 DAPK1P53355 1430 aa22.66■■□□□ 1.22
USHBP1-202ENST00000324554 CCER2I3L3R5 266 aa22.65■■□□□ 1.22
USHBP1-202ENST00000324554 DNMT1P26358 1616 aaKnown RBP22.64■■□□□ 1.22
USHBP1-202ENST00000324554 ROCK1Q13464 1354 aa22.64■■□□□ 1.22
USHBP1-202ENST00000324554 ANP32CO43423 234 aa22.64■■□□□ 1.21
USHBP1-202ENST00000324554 MYT1Q01538 1121 aa22.63■■□□□ 1.21
USHBP1-202ENST00000324554 MPHOSPH9Q99550 1183 aa22.63■■□□□ 1.21
USHBP1-202ENST00000324554 OSCARQ8IYS5 282 aa22.62■■□□□ 1.21
USHBP1-202ENST00000324554 ABCC5O15440 1437 aa22.62■■□□□ 1.21
USHBP1-202ENST00000324554 ADCY10Q96PN6 1610 aa22.6■■□□□ 1.21
USHBP1-202ENST00000324554 ABCC2Q92887 1545 aa22.59■■□□□ 1.21
USHBP1-202ENST00000324554 CAMSAP2Q08AD1 1489 aa22.59■■□□□ 1.21
USHBP1-202ENST00000324554 TSHZ2Q9NRE2 1034 aa22.58■■□□□ 1.2
USHBP1-202ENST00000324554 ABCC10Q5T3U5 1492 aa22.57■■□□□ 1.2
USHBP1-202ENST00000324554 CDC42BPAQ5VT25 1732 aa22.54■■□□□ 1.2
USHBP1-202ENST00000324554 ITSN2Q9NZM3 1697 aa22.54■■□□□ 1.2
USHBP1-202ENST00000324554 FOXD1Q16676 465 aa22.54■■□□□ 1.2
USHBP1-202ENST00000324554 HNRNPMP52272 730 aaKnown RBP eCLIP22.53■■□□□ 1.2
USHBP1-202ENST00000324554 BCANQ96GW7 911 aa22.53■■□□□ 1.2
USHBP1-202ENST00000324554 FKBP8Q14318 412 aa22.53■■□□□ 1.2
USHBP1-202ENST00000324554 ANKRD30BQ9BXX2 1392 aa22.51■■□□□ 1.19
USHBP1-202ENST00000324554 HSPA5P11021 654 aaKnown RBP22.51■■□□□ 1.19
USHBP1-202ENST00000324554 L3MBTL2Q969R5 705 aa22.51■■□□□ 1.19
USHBP1-202ENST00000324554 RPRD2Q5VT52 1461 aaKnown RBP22.49■■□□□ 1.19
USHBP1-202ENST00000324554 WASHC2AQ641Q2 1341 aa22.48■■□□□ 1.19
USHBP1-202ENST00000324554 ZCCHC11Q5TAX3 1644 aaKnown RBP22.48■■□□□ 1.19
USHBP1-202ENST00000324554 EIF4G2P78344 907 aaKnown RBP eCLIP22.46■■□□□ 1.19
USHBP1-202ENST00000324554 TTC37Q6PGP7 1564 aa22.46■■□□□ 1.19
USHBP1-202ENST00000324554 TEX14Q8IWB6 1497 aa22.45■■□□□ 1.18
USHBP1-202ENST00000324554 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.45■■□□□ 1.18
USHBP1-202ENST00000324554 SLC4A1APQ9BWU0 796 aaKnown RBP22.44■■□□□ 1.18
USHBP1-202ENST00000324554 ADGBQ8N7X0 1667 aa22.43■■□□□ 1.18
USHBP1-202ENST00000324554 NCOA1Q15788 1441 aa22.43■■□□□ 1.18
USHBP1-202ENST00000324554 UHRF1BP1LA0JNW5 1464 aa22.42■■□□□ 1.18
USHBP1-202ENST00000324554 CDC42BPBQ9Y5S2 1711 aa22.42■■□□□ 1.18
USHBP1-202ENST00000324554 PZPP20742 1482 aa22.41■■□□□ 1.18
USHBP1-202ENST00000324554 ADGRL2O95490 1459 aa22.41■■□□□ 1.18
USHBP1-202ENST00000324554 CROCC2H7BZ55 1655 aa22.4■■□□□ 1.18
USHBP1-202ENST00000324554 ARHGAP5Q13017 1502 aa22.39■■□□□ 1.17
USHBP1-202ENST00000324554 TSPY4P0CV99 314 aa22.39■■□□□ 1.17
USHBP1-202ENST00000324554 TSPY10P0CW01 314 aa22.39■■□□□ 1.17
USHBP1-202ENST00000324554 NBPF8Q3BBV2 869 aa22.38■■□□□ 1.17
USHBP1-202ENST00000324554 SAMD9LQ8IVG5 1584 aa22.37■■□□□ 1.17
USHBP1-202ENST00000324554 NEFLP07196 543 aa22.36■■□□□ 1.17
USHBP1-202ENST00000324554 PREX2Q70Z35 1606 aa22.36■■□□□ 1.17
USHBP1-202ENST00000324554 CNTLNQ9NXG0 1405 aa22.35■■□□□ 1.17
USHBP1-202ENST00000324554 C9orf84Q5VXU9 1444 aa22.35■■□□□ 1.17
USHBP1-202ENST00000324554 ANKRD30AQ9BXX3 1397 aa22.34■■□□□ 1.17
USHBP1-202ENST00000324554 MBD5Q9P267 1494 aa22.33■■□□□ 1.17
USHBP1-202ENST00000324554 C11orf95C9JLR9 678 aaPredicted RBP22.33■■□□□ 1.17
USHBP1-202ENST00000324554 CCDC7Q96M83 1385 aa22.32■■□□□ 1.16
USHBP1-202ENST00000324554 SYCP2Q9BX26 1530 aa22.31■■□□□ 1.16
USHBP1-202ENST00000324554 SPATA31E1Q6ZUB1 1445 aa22.31■■□□□ 1.16
USHBP1-202ENST00000324554 KIAA1107Q9UPP5 1409 aa22.3■■□□□ 1.16
USHBP1-202ENST00000324554 MYO5CQ9NQX4 1742 aa22.29■■□□□ 1.16
USHBP1-202ENST00000324554 ANKRD50Q9ULJ7 1429 aa22.28■■□□□ 1.16
USHBP1-202ENST00000324554 NPM1P06748 294 aaKnown RBP eCLIP22.28■■□□□ 1.16
USHBP1-202ENST00000324554 SHANK2Q9UPX8 1470 aa22.27■■□□□ 1.16
USHBP1-202ENST00000324554 HNRNPUQ00839 825 aaKnown RBP eCLIP22.27■■□□□ 1.16
USHBP1-202ENST00000324554 PLCH2O75038 1416 aa22.27■■□□□ 1.15
USHBP1-202ENST00000324554 WDR7Q9Y4E6 1490 aa22.27■■□□□ 1.15
USHBP1-202ENST00000324554 EFCAB2Q5VUJ9 269 aa22.26■■□□□ 1.15
USHBP1-202ENST00000324554 ASXL2Q76L83 1435 aa22.26■■□□□ 1.15
USHBP1-202ENST00000324554 CCDC141Q6ZP82 1450 aa22.26■■□□□ 1.15
USHBP1-202ENST00000324554 KIF15Q9NS87 1388 aa22.25■■□□□ 1.15
USHBP1-202ENST00000324554 POLR1AO95602 1720 aaPredicted RBP22.25■■□□□ 1.15
USHBP1-202ENST00000324554 ARHGEF12Q9NZN5 1544 aa22.25■■□□□ 1.15
USHBP1-202ENST00000324554 PKD2Q13563 968 aa22.24■■□□□ 1.15
USHBP1-202ENST00000324554 CYB5RLQ6IPT4 315 aa22.23■■□□□ 1.15
USHBP1-202ENST00000324554 ARHGEF5Q12774 1597 aa22.22■■□□□ 1.15
USHBP1-202ENST00000324554 KIF7Q2M1P5 1343 aa22.22■■□□□ 1.15
USHBP1-202ENST00000324554 AFAP1Q8N556 730 aa22.21■■□□□ 1.15
USHBP1-202ENST00000324554 PRKRIP1Q9H875 184 aaPredicted RBP22.21■■□□□ 1.15
USHBP1-202ENST00000324554 CCDC184Q52MB2 194 aa22.2■■□□□ 1.14
USHBP1-202ENST00000324554 RSPH4AQ5TD94 716 aa22.2■■□□□ 1.14
USHBP1-202ENST00000324554 NUP155O75694 1391 aa22.19■■□□□ 1.14
USHBP1-202ENST00000324554 TRAPPC8Q9Y2L5 1435 aa22.17■■□□□ 1.14
USHBP1-202ENST00000324554 KDM5DQ9BY66 1539 aa22.16■■□□□ 1.14
USHBP1-202ENST00000324554 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.16■■□□□ 1.14
USHBP1-202ENST00000324554 RBM19Q9Y4C8 960 aaKnown RBP22.14■■□□□ 1.13
USHBP1-202ENST00000324554 USP47Q96K76 1375 aa22.12■■□□□ 1.13
USHBP1-202ENST00000324554 ANP32EQ9BTT0 268 aa22.12■■□□□ 1.13
USHBP1-202ENST00000324554 MYT1LQ9UL68 1186 aa22.12■■□□□ 1.13
USHBP1-202ENST00000324554 FANCAO15360 1455 aa22.12■■□□□ 1.13
USHBP1-202ENST00000324554 PLEKHH2Q8IVE3 1493 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms