RNA–Protein interactions for RNA: ENST00000324501.9

PSEN1-201, Transcript of presenilin 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PSEN1, Length 6,078 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-201ENST00000324501 CCDC18Q5T9S5 1454 aa9.62□□□□□ -0.87
PSEN1-201ENST00000324501 PTPRGP23470 1445 aa9.62□□□□□ -0.87
PSEN1-201ENST00000324501 U2SURPO15042 1029 aaKnown RBP9.61□□□□□ -0.87
PSEN1-201ENST00000324501 TMF1P82094 1093 aa9.61□□□□□ -0.87
PSEN1-201ENST00000324501 RSPH4AQ5TD94 716 aa9.61□□□□□ -0.87
PSEN1-201ENST00000324501 SPAG9O60271 1321 aaKnown RBP9.61□□□□□ -0.87
PSEN1-201ENST00000324501 SYNJ1O43426 1573 aa9.6□□□□□ -0.87
PSEN1-201ENST00000324501 ROCK2O75116 1388 aaKnown RBP9.6□□□□□ -0.87
PSEN1-201ENST00000324501 DNAJC5BQ9UF47 199 aa9.58□□□□□ -0.88
PSEN1-201ENST00000324501 WASHC2CQ9Y4E1 1318 aa9.58□□□□□ -0.88
PSEN1-201ENST00000324501 SUPT16HQ9Y5B9 1047 aaKnown RBP9.58□□□□□ -0.88
PSEN1-201ENST00000324501 HSP90AA1P07900 732 aaKnown RBP9.57□□□□□ -0.88
PSEN1-201ENST00000324501 MAPK8IP3Q9UPT6 1336 aa9.57□□□□□ -0.88
PSEN1-201ENST00000324501 LAMC3Q9Y6N6 1575 aa9.56□□□□□ -0.88
PSEN1-201ENST00000324501 PAK3O75914 559 aaPredicted RBP9.56□□□□□ -0.88
PSEN1-201ENST00000324501 ZNF644Q9H582 1327 aaPredicted RBP9.55□□□□□ -0.88
PSEN1-201ENST00000324501 MYH16Q9H6N6 1097 aa9.55□□□□□ -0.88
PSEN1-201ENST00000324501 MORC1Q86VD1 984 aa9.55□□□□□ -0.88
PSEN1-201ENST00000324501 CFTRP13569 1480 aa9.54□□□□□ -0.88
PSEN1-201ENST00000324501 L3MBTL2Q969R5 705 aa9.54□□□□□ -0.88
PSEN1-201ENST00000324501 UPF2Q9HAU5 1272 aaKnown RBP9.54□□□□□ -0.88
PSEN1-201ENST00000324501 NUTM2FA1L443 756 aa9.54□□□□□ -0.88
PSEN1-201ENST00000324501 GRIN2BQ13224 1484 aa9.54□□□□□ -0.88
PSEN1-201ENST00000324501 FRAT1Q92837 279 aaPredicted RBP9.54□□□□□ -0.88
PSEN1-201ENST00000324501 BICRAQ9NZM4 1560 aa9.54□□□□□ -0.88
PSEN1-201ENST00000324501 CUX1P39880 1505 aa9.54□□□□□ -0.88
PSEN1-201ENST00000324501 NUDCQ9Y266 331 aa9.53□□□□□ -0.88
PSEN1-201ENST00000324501 KIF21BO75037 1637 aa9.53□□□□□ -0.88
PSEN1-201ENST00000324501 FAM69CQ0P6D2 419 aa9.52□□□□□ -0.89
PSEN1-201ENST00000324501 FTSJ3Q8IY81 847 aaKnown RBP9.51□□□□□ -0.89
PSEN1-201ENST00000324501 EID1Q9Y6B2 187 aa9.51□□□□□ -0.89
PSEN1-201ENST00000324501 TOPBP1Q92547 1522 aa9.5□□□□□ -0.89
PSEN1-201ENST00000324501 TRAK1Q9UPV9 953 aa9.49□□□□□ -0.89
PSEN1-201ENST00000324501 SNAPC4Q5SXM2 1469 aa9.49□□□□□ -0.89
PSEN1-201ENST00000324501 NBR1Q14596 966 aa9.49□□□□□ -0.89
PSEN1-201ENST00000324501 HDGFL2Q7Z4V5 671 aaPredicted RBP9.48□□□□□ -0.89
PSEN1-201ENST00000324501 PRG4Q92954 1404 aaPredicted RBP9.48□□□□□ -0.89
PSEN1-201ENST00000324501 UNC13AQ9UPW8 1703 aa9.48□□□□□ -0.89
PSEN1-201ENST00000324501 POLA1P09884 1462 aaPredicted RBP9.48□□□□□ -0.89
PSEN1-201ENST00000324501 TOP2BQ02880 1626 aa9.47□□□□□ -0.89
PSEN1-201ENST00000324501 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.47□□□□□ -0.89
PSEN1-201ENST00000324501 DHX57Q6P158 1386 aaKnown RBP9.47□□□□□ -0.89
PSEN1-201ENST00000324501 KTN1Q86UP2 1357 aaKnown RBP9.47□□□□□ -0.89
PSEN1-201ENST00000324501 PHLDB1Q86UU1 1377 aa9.47□□□□□ -0.89
PSEN1-201ENST00000324501 TIMELESSQ9UNS1 1208 aa9.46□□□□□ -0.89
PSEN1-201ENST00000324501 CCDC144AA2RUR9 1427 aa9.45□□□□□ -0.9
PSEN1-201ENST00000324501 CCDC146Q8IYE0 955 aa9.45□□□□□ -0.9
PSEN1-201ENST00000324501 ARAP1Q96P48 1450 aa9.44□□□□□ -0.9
PSEN1-201ENST00000324501 LRRC9Q6ZRR7 1453 aa9.44□□□□□ -0.9
PSEN1-201ENST00000324501 ARHGAP5Q13017 1502 aa9.44□□□□□ -0.9
PSEN1-201ENST00000324501 POGZQ7Z3K3 1410 aa9.44□□□□□ -0.9
PSEN1-201ENST00000324501 NPHP1O15259 732 aa9.44□□□□□ -0.9
PSEN1-201ENST00000324501 EIF3AQ14152 1382 aaKnown RBP9.43□□□□□ -0.9
PSEN1-201ENST00000324501 CSB-PGBD3P0DP91 1061 aa9.43□□□□□ -0.9
PSEN1-201ENST00000324501 RGS3P49796 1198 aa9.43□□□□□ -0.9
PSEN1-201ENST00000324501 FGD6Q6ZV73 1430 aa9.43□□□□□ -0.9
PSEN1-201ENST00000324501 U2AF1L5P0DN76 240 aaPredicted RBP9.43□□□□□ -0.9
PSEN1-201ENST00000324501 U2AF1Q01081 240 aaKnown RBP eCLIP9.43□□□□□ -0.9
PSEN1-201ENST00000324501 NCOA2Q15596 1464 aa9.43□□□□□ -0.9
PSEN1-201ENST00000324501 B4GALNT3Q6L9W6 998 aa9.43□□□□□ -0.9
PSEN1-201ENST00000324501 DNMBPQ6XZF7 1577 aa9.42□□□□□ -0.9
PSEN1-201ENST00000324501 ST20-MTHFSA0A0A6YYL1 179 aa9.42□□□□□ -0.9
PSEN1-201ENST00000324501 MYOM3Q5VTT5 1437 aa9.42□□□□□ -0.9
PSEN1-201ENST00000324501 TPRNQ4KMQ1 711 aa9.42□□□□□ -0.9
PSEN1-201ENST00000324501 LTV1Q96GA3 475 aaPredicted RBP9.42□□□□□ -0.9
PSEN1-201ENST00000324501 CASKIN1Q8WXD9 1431 aa9.42□□□□□ -0.9
PSEN1-201ENST00000324501 NGDNQ8NEJ9 315 aaKnown RBP9.41□□□□□ -0.9
PSEN1-201ENST00000324501 TAOK2Q9UL54 1235 aa9.41□□□□□ -0.9
PSEN1-201ENST00000324501 PNNQ9H307 717 aaKnown RBP9.41□□□□□ -0.9
PSEN1-201ENST00000324501 RTF1Q92541 710 aaKnown RBP9.4□□□□□ -0.9
PSEN1-201ENST00000324501 AFAP1Q8N556 730 aa9.4□□□□□ -0.9
PSEN1-201ENST00000324501 MINK1Q8N4C8 1332 aaPredicted RBP9.4□□□□□ -0.91
PSEN1-201ENST00000324501 OS9Q13438 667 aaPredicted RBP9.4□□□□□ -0.91
PSEN1-201ENST00000324501 CCDC9Q9Y3X0 531 aaKnown RBP9.4□□□□□ -0.91
PSEN1-201ENST00000324501 KIF15Q9NS87 1388 aa9.39□□□□□ -0.91
PSEN1-201ENST00000324501 ERICH3Q5RHP9 1530 aa9.39□□□□□ -0.91
PSEN1-201ENST00000324501 ZNF330Q9Y3S2 320 aaPredicted RBP9.39□□□□□ -0.91
PSEN1-201ENST00000324501 PANK3Q9H999 370 aa9.39□□□□□ -0.91
PSEN1-201ENST00000324501 CCER2I3L3R5 266 aa9.38□□□□□ -0.91
PSEN1-201ENST00000324501 APBB1O00213 710 aa9.37□□□□□ -0.91
PSEN1-201ENST00000324501 SYNJ2O15056 1496 aa9.37□□□□□ -0.91
PSEN1-201ENST00000324501 RRP7AQ9Y3A4 280 aaKnown RBP9.37□□□□□ -0.91
PSEN1-201ENST00000324501 FYCO1Q9BQS8 1478 aa9.37□□□□□ -0.91
PSEN1-201ENST00000324501 RALBP1Q15311 655 aa9.36□□□□□ -0.91
PSEN1-201ENST00000324501 TERF2IPQ9NYB0 399 aa9.36□□□□□ -0.91
PSEN1-201ENST00000324501 CDK13Q14004 1512 aaKnown RBP9.36□□□□□ -0.91
PSEN1-201ENST00000324501 PPP4R2Q9NY27 417 aa9.35□□□□□ -0.91
PSEN1-201ENST00000324501 MAGI1Q96QZ7 1491 aaPredicted RBP9.35□□□□□ -0.91
PSEN1-201ENST00000324501 PRXQ9BXM0 1461 aa9.35□□□□□ -0.91
PSEN1-201ENST00000324501 USP47Q96K76 1375 aa9.35□□□□□ -0.91
PSEN1-201ENST00000324501 AMPHP49418 695 aa9.34□□□□□ -0.91
PSEN1-201ENST00000324501 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.34□□□□□ -0.91
PSEN1-201ENST00000324501 VGFO15240 615 aaPredicted RBP9.34□□□□□ -0.91
PSEN1-201ENST00000324501 CASC1Q6TDU7 716 aa9.34□□□□□ -0.92
PSEN1-201ENST00000324501 TMEM132EQ6IEE7 984 aa9.33□□□□□ -0.92
PSEN1-201ENST00000324501 UACAQ9BZF9 1416 aa9.33□□□□□ -0.92
PSEN1-201ENST00000324501 ANKRD50Q9ULJ7 1429 aa9.33□□□□□ -0.92
PSEN1-201ENST00000324501 HMGB2P26583 209 aaKnown RBP9.32□□□□□ -0.92
PSEN1-201ENST00000324501 HECW1Q76N89 1606 aa9.32□□□□□ -0.92
PSEN1-201ENST00000324501 PLEKHH2Q8IVE3 1493 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms