RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 DAXXQ9UER7 740 aaPredicted RBP12.69□□□□□ -0.38
TMEM39A-201ENST00000319172 TMC1Q8TDI8 760 aa12.69□□□□□ -0.38
TMEM39A-201ENST00000319172 GRIN2AQ12879 1464 aa12.68□□□□□ -0.38
TMEM39A-201ENST00000319172 SENP3-EIF4A1A0A087X0R7 540 aa12.68□□□□□ -0.38
TMEM39A-201ENST00000319172 RSPH4AQ5TD94 716 aa12.68□□□□□ -0.38
TMEM39A-201ENST00000319172 HSPA5P11021 654 aaKnown RBP12.68□□□□□ -0.38
TMEM39A-201ENST00000319172 IQGAP2Q13576 1575 aa12.68□□□□□ -0.38
TMEM39A-201ENST00000319172 TRHP20396 242 aaPredicted RBP12.68□□□□□ -0.38
TMEM39A-201ENST00000319172 SYNJ2O15056 1496 aa12.67□□□□□ -0.38
TMEM39A-201ENST00000319172 CDK13Q14004 1512 aaKnown RBP12.67□□□□□ -0.38
TMEM39A-201ENST00000319172 PCF11O94913 1555 aaKnown RBP12.66□□□□□ -0.38
TMEM39A-201ENST00000319172 KANK1Q14678 1352 aa12.65□□□□□ -0.38
TMEM39A-201ENST00000319172 PLB1Q6P1J6 1458 aa12.64□□□□□ -0.39
TMEM39A-201ENST00000319172 MAGI1Q96QZ7 1491 aaPredicted RBP12.64□□□□□ -0.39
TMEM39A-201ENST00000319172 KIF21AQ7Z4S6 1674 aa12.63□□□□□ -0.39
TMEM39A-201ENST00000319172 EPRSP07814 1512 aaKnown RBP12.63□□□□□ -0.39
TMEM39A-201ENST00000319172 TROQ12816 1431 aaPredicted RBP12.61□□□□□ -0.39
TMEM39A-201ENST00000319172 AFAP1Q8N556 730 aa12.6□□□□□ -0.39
TMEM39A-201ENST00000319172 FKBP8Q14318 412 aa12.6□□□□□ -0.39
TMEM39A-201ENST00000319172 EHBP1L1Q8N3D4 1523 aa12.59□□□□□ -0.39
TMEM39A-201ENST00000319172 KIF15Q9NS87 1388 aa12.59□□□□□ -0.39
TMEM39A-201ENST00000319172 HECW1Q76N89 1606 aa12.58□□□□□ -0.4
TMEM39A-201ENST00000319172 SCAF1Q9H7N4 1312 aaKnown RBP12.58□□□□□ -0.4
TMEM39A-201ENST00000319172 UACAQ9BZF9 1416 aa12.57□□□□□ -0.4
TMEM39A-201ENST00000319172 ANKRD50Q9ULJ7 1429 aa12.56□□□□□ -0.4
TMEM39A-201ENST00000319172 WASHC2CQ9Y4E1 1318 aa12.55□□□□□ -0.4
TMEM39A-201ENST00000319172 SAFB2Q14151 953 aaKnown RBP eCLIP12.54□□□□□ -0.4
TMEM39A-201ENST00000319172 NUTM2DQ5VT03 806 aaPredicted RBP12.54□□□□□ -0.4
TMEM39A-201ENST00000319172 FAM69CQ0P6D2 419 aa12.54□□□□□ -0.4
TMEM39A-201ENST00000319172 MIA2Q96PC5 1412 aa12.54□□□□□ -0.4
TMEM39A-201ENST00000319172 KNSTRNQ9Y448 316 aa12.53□□□□□ -0.4
TMEM39A-201ENST00000319172 ROCK2O75116 1388 aaKnown RBP12.53□□□□□ -0.4
TMEM39A-201ENST00000319172 ARHGAP5Q13017 1502 aa12.53□□□□□ -0.4
TMEM39A-201ENST00000319172 IRX6P78412 446 aaPredicted RBP12.53□□□□□ -0.4
TMEM39A-201ENST00000319172 WDR43Q15061 677 aaKnown RBP eCLIP12.53□□□□□ -0.4
TMEM39A-201ENST00000319172 CC2D1BQ5T0F9 858 aaKnown RBP12.53□□□□□ -0.4
TMEM39A-201ENST00000319172 NEFMP07197 916 aa12.52□□□□□ -0.41
TMEM39A-201ENST00000319172 CDCA8Q53HL2 280 aa12.51□□□□□ -0.41
TMEM39A-201ENST00000319172 TMF1P82094 1093 aa12.51□□□□□ -0.41
TMEM39A-201ENST00000319172 HFM1A2PYH4 1435 aa12.51□□□□□ -0.41
TMEM39A-201ENST00000319172 CCDC144AA2RUR9 1427 aa12.51□□□□□ -0.41
TMEM39A-201ENST00000319172 POGKQ9P215 609 aa12.51□□□□□ -0.41
TMEM39A-201ENST00000319172 MAP3K1Q13233 1512 aa12.51□□□□□ -0.41
TMEM39A-201ENST00000319172 SUPT6HQ7KZ85 1726 aaKnown RBP12.51□□□□□ -0.41
TMEM39A-201ENST00000319172 STK26Q9P289 416 aa12.5□□□□□ -0.41
TMEM39A-201ENST00000319172 ARHGEF11O15085 1522 aa12.5□□□□□ -0.41
TMEM39A-201ENST00000319172 CANXP27824 592 aaKnown RBP12.49□□□□□ -0.41
TMEM39A-201ENST00000319172 NAIPQ13075 1403 aa12.49□□□□□ -0.41
TMEM39A-201ENST00000319172 DAPK1P53355 1430 aa12.48□□□□□ -0.41
TMEM39A-201ENST00000319172 ADAMTS12P58397 1594 aa12.48□□□□□ -0.41
TMEM39A-201ENST00000319172 WDR62O43379 1518 aa12.48□□□□□ -0.41
TMEM39A-201ENST00000319172 TNNT2P45379 298 aaPredicted RBP12.48□□□□□ -0.41
TMEM39A-201ENST00000319172 C9orf84Q5VXU9 1444 aa12.48□□□□□ -0.41
TMEM39A-201ENST00000319172 ST20-MTHFSA0A0A6YYL1 179 aa12.48□□□□□ -0.41
TMEM39A-201ENST00000319172 PLEKHG5O94827 1062 aa12.48□□□□□ -0.41
TMEM39A-201ENST00000319172 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.47□□□□□ -0.41
TMEM39A-201ENST00000319172 EIF4G3O43432 1585 aaKnown RBP12.47□□□□□ -0.41
TMEM39A-201ENST00000319172 THOC2Q8NI27 1593 aaKnown RBP12.46□□□□□ -0.41
TMEM39A-201ENST00000319172 ABCA5Q8WWZ7 1642 aa12.44□□□□□ -0.42
TMEM39A-201ENST00000319172 SCAPERQ9BY12 1400 aa12.43□□□□□ -0.42
TMEM39A-201ENST00000319172 RAPGEF3O95398 923 aa12.43□□□□□ -0.42
TMEM39A-201ENST00000319172 NUP153P49790 1475 aaKnown RBP12.43□□□□□ -0.42
TMEM39A-201ENST00000319172 ABCC5O15440 1437 aa12.43□□□□□ -0.42
TMEM39A-201ENST00000319172 BCL11AQ9H165 835 aa12.43□□□□□ -0.42
TMEM39A-201ENST00000319172 CTTNBP2Q8WZ74 1663 aa12.42□□□□□ -0.42
TMEM39A-201ENST00000319172 PPM1GO15355 546 aaPredicted RBP12.42□□□□□ -0.42
TMEM39A-201ENST00000319172 SRPK2P78362 688 aaKnown RBP12.42□□□□□ -0.42
TMEM39A-201ENST00000319172 CCER2I3L3R5 266 aa12.42□□□□□ -0.42
TMEM39A-201ENST00000319172 C14orf37Q86TY3 774 aa12.42□□□□□ -0.42
TMEM39A-201ENST00000319172 PTPN23Q9H3S7 1636 aa12.42□□□□□ -0.42
TMEM39A-201ENST00000319172 PTPRKQ15262 1439 aa12.41□□□□□ -0.42
TMEM39A-201ENST00000319172 TRAK1Q9UPV9 953 aa12.41□□□□□ -0.42
TMEM39A-201ENST00000319172 SUPT16HQ9Y5B9 1047 aaKnown RBP12.41□□□□□ -0.42
TMEM39A-201ENST00000319172 CAMSAP2Q08AD1 1489 aa12.4□□□□□ -0.42
TMEM39A-201ENST00000319172 USP47Q96K76 1375 aa12.4□□□□□ -0.42
TMEM39A-201ENST00000319172 TARBP1Q13395 1621 aaKnown RBP12.4□□□□□ -0.42
TMEM39A-201ENST00000319172 ATP10BO94823 1461 aa12.4□□□□□ -0.42
TMEM39A-201ENST00000319172 UGGT2Q9NYU1 1516 aa12.4□□□□□ -0.42
TMEM39A-201ENST00000319172 NBPF8Q3BBV2 869 aa12.39□□□□□ -0.43
TMEM39A-201ENST00000319172 NEUROD2Q15784 382 aa12.39□□□□□ -0.43
TMEM39A-201ENST00000319172 KIAA0556O60303 1618 aa12.37□□□□□ -0.43
TMEM39A-201ENST00000319172 DISP1Q96F81 1524 aa12.37□□□□□ -0.43
TMEM39A-201ENST00000319172 RAPGEF6Q8TEU7 1601 aa12.37□□□□□ -0.43
TMEM39A-201ENST00000319172 GPATCH8Q9UKJ3 1502 aaKnown RBP12.37□□□□□ -0.43
TMEM39A-201ENST00000319172 ROCK1Q13464 1354 aa12.36□□□□□ -0.43
TMEM39A-201ENST00000319172 PBRM1Q86U86 1689 aa12.36□□□□□ -0.43
TMEM39A-201ENST00000319172 NUP160Q12769 1436 aa12.36□□□□□ -0.43
TMEM39A-201ENST00000319172 KIAA1107Q9UPP5 1409 aa12.36□□□□□ -0.43
TMEM39A-201ENST00000319172 ZBTB7CA1YPR0 619 aa12.36□□□□□ -0.43
TMEM39A-201ENST00000319172 NCOA1Q15788 1441 aa12.35□□□□□ -0.43
TMEM39A-201ENST00000319172 HDGFP51858 240 aaKnown RBP12.35□□□□□ -0.43
TMEM39A-201ENST00000319172 PLEKHH2Q8IVE3 1493 aa12.35□□□□□ -0.43
TMEM39A-201ENST00000319172 CFAP53Q96M91 514 aa12.34□□□□□ -0.43
TMEM39A-201ENST00000319172 KIF14Q15058 1648 aa12.34□□□□□ -0.43
TMEM39A-201ENST00000319172 CCDC136Q96JN2 1154 aa12.34□□□□□ -0.43
TMEM39A-201ENST00000319172 CCDC141Q6ZP82 1450 aa12.33□□□□□ -0.44
TMEM39A-201ENST00000319172 AKNAQ7Z591 1439 aa12.33□□□□□ -0.44
TMEM39A-201ENST00000319172 KTN1Q86UP2 1357 aaKnown RBP12.33□□□□□ -0.44
TMEM39A-201ENST00000319172 NBPF1Q3BBV0 1214 aa12.33□□□□□ -0.44
TMEM39A-201ENST00000319172 MORC1Q86VD1 984 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms