RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 NEUROD2Q15784 382 aa19.44■□□□□ 0.7
HCFC1-201ENST00000310441 KIF27Q86VH2 1401 aa19.43■□□□□ 0.7
HCFC1-201ENST00000310441 CHMP4CQ96CF2 233 aa19.43■□□□□ 0.7
HCFC1-201ENST00000310441 TMX4Q9H1E5 349 aaPredicted RBP19.43■□□□□ 0.7
HCFC1-201ENST00000310441 CEP89Q96ST8 783 aa19.43■□□□□ 0.7
HCFC1-201ENST00000310441 DEKP35659 375 aaKnown RBP19.42■□□□□ 0.7
HCFC1-201ENST00000310441 RGL3Q3MIN7 710 aa19.42■□□□□ 0.7
HCFC1-201ENST00000310441 NCBP3Q53F19 620 aaKnown RBP19.42■□□□□ 0.7
HCFC1-201ENST00000310441 U2SURPO15042 1029 aaKnown RBP19.41■□□□□ 0.7
HCFC1-201ENST00000310441 TPM3P06753 285 aa19.41■□□□□ 0.7
HCFC1-201ENST00000310441 ISY1Q9ULR0 285 aaKnown RBP19.4■□□□□ 0.7
HCFC1-201ENST00000310441 TIMELESSQ9UNS1 1208 aa19.4■□□□□ 0.7
HCFC1-201ENST00000310441 EIF3AQ14152 1382 aaKnown RBP19.39■□□□□ 0.7
HCFC1-201ENST00000310441 CCDC70Q6NSX1 233 aa19.39■□□□□ 0.7
HCFC1-201ENST00000310441 HIRIP3Q9BW71 556 aaPredicted RBP19.39■□□□□ 0.7
HCFC1-201ENST00000310441 PLEKHG5O94827 1062 aa19.39■□□□□ 0.69
HCFC1-201ENST00000310441 KTN1Q86UP2 1357 aaKnown RBP19.39■□□□□ 0.69
HCFC1-201ENST00000310441 PRM3Q9NNZ6 103 aa19.39■□□□□ 0.69
HCFC1-201ENST00000310441 GPS2Q13227 327 aa19.38■□□□□ 0.69
HCFC1-201ENST00000310441 RWDD1Q9H446 243 aaPredicted RBP19.37■□□□□ 0.69
HCFC1-201ENST00000310441 CCER2I3L3R5 266 aa19.37■□□□□ 0.69
HCFC1-201ENST00000310441 CALRP27797 417 aaKnown RBP19.37■□□□□ 0.69
HCFC1-201ENST00000310441 GOLGA6L3A6NEY3 463 aa19.36■□□□□ 0.69
HCFC1-201ENST00000310441 TSR1Q2NL82 804 aaKnown RBP19.34■□□□□ 0.69
HCFC1-201ENST00000310441 TCERG1O14776 1098 aaKnown RBP19.34■□□□□ 0.69
HCFC1-201ENST00000310441 LMOD2Q6P5Q4 547 aa19.34■□□□□ 0.69
HCFC1-201ENST00000310441 PMFBP1Q8TBY8 1022 aa19.34■□□□□ 0.69
HCFC1-201ENST00000310441 HMMRO75330 724 aa19.32■□□□□ 0.68
HCFC1-201ENST00000310441 SPAG9O60271 1321 aaKnown RBP19.32■□□□□ 0.68
HCFC1-201ENST00000310441 PHLDB1Q86UU1 1377 aa19.31■□□□□ 0.68
HCFC1-201ENST00000310441 CC2D1BQ5T0F9 858 aaKnown RBP19.31■□□□□ 0.68
HCFC1-201ENST00000310441 DDX11L8A8MPP1 907 aa19.3■□□□□ 0.68
HCFC1-201ENST00000310441 KCNH8Q96L42 1107 aa19.3■□□□□ 0.68
HCFC1-201ENST00000310441 ATP6V1DQ9Y5K8 247 aa19.29■□□□□ 0.68
HCFC1-201ENST00000310441 TPM1P09493 284 aa19.29■□□□□ 0.68
HCFC1-201ENST00000310441 CCNB3Q8WWL7 1395 aa19.29■□□□□ 0.68
HCFC1-201ENST00000310441 ST18O60284 1047 aa19.29■□□□□ 0.68
HCFC1-201ENST00000310441 MORC1Q86VD1 984 aa19.29■□□□□ 0.68
HCFC1-201ENST00000310441 B4GALNT3Q6L9W6 998 aa19.28■□□□□ 0.68
HCFC1-201ENST00000310441 RSPH6AQ9H0K4 717 aa19.28■□□□□ 0.68
HCFC1-201ENST00000310441 TPM2P07951 284 aa19.28■□□□□ 0.68
HCFC1-201ENST00000310441 BAZ1BQ9UIG0 1483 aaKnown RBP19.27■□□□□ 0.68
HCFC1-201ENST00000310441 RASSF8Q8NHQ8 419 aa19.27■□□□□ 0.68
HCFC1-201ENST00000310441 ARHGAP35Q9NRY4 1499 aa19.26■□□□□ 0.67
HCFC1-201ENST00000310441 KIF16BQ96L93 1317 aa19.26■□□□□ 0.67
HCFC1-201ENST00000310441 RALBP1Q15311 655 aa19.25■□□□□ 0.67
HCFC1-201ENST00000310441 HSP90B1P14625 803 aaKnown RBP19.25■□□□□ 0.67
HCFC1-201ENST00000310441 NACADO15069 1562 aa19.25■□□□□ 0.67
HCFC1-201ENST00000310441 HDGFL2Q7Z4V5 671 aaPredicted RBP19.25■□□□□ 0.67
HCFC1-201ENST00000310441 SRPK2P78362 688 aaKnown RBP19.23■□□□□ 0.67
HCFC1-201ENST00000310441 TNIKQ9UKE5 1360 aa19.23■□□□□ 0.67
HCFC1-201ENST00000310441 GORABQ5T7V8 394 aa19.23■□□□□ 0.67
HCFC1-201ENST00000310441 HSP90AA2PQ14568 343 aaPredicted RBP19.22■□□□□ 0.67
HCFC1-201ENST00000310441 WRNQ14191 1432 aaPredicted RBP eCLIP19.22■□□□□ 0.67
HCFC1-201ENST00000310441 SPRYD3Q8NCJ5 442 aa19.22■□□□□ 0.67
HCFC1-201ENST00000310441 KAT6BQ8WYB5 2073 aa19.21■□□□□ 0.67
HCFC1-201ENST00000310441 SKOR2Q2VWA4 1001 aaPredicted RBP19.21■□□□□ 0.67
HCFC1-201ENST00000310441 STK31Q9BXU1 1019 aa19.21■□□□□ 0.67
HCFC1-201ENST00000310441 TEX35Q5T0J7 233 aa19.2■□□□□ 0.66
HCFC1-201ENST00000310441 ITPRIPQ8IWB1 547 aa19.2■□□□□ 0.66
HCFC1-201ENST00000310441 LRRFIP1Q32MZ4 808 aaKnown RBP19.19■□□□□ 0.66
HCFC1-201ENST00000310441 LMOD3Q0VAK6 560 aa19.18■□□□□ 0.66
HCFC1-201ENST00000310441 RCAN3Q9UKA8 241 aa19.18■□□□□ 0.66
HCFC1-201ENST00000310441 GOLGA6L19H0YKK7 550 aa19.18■□□□□ 0.66
HCFC1-201ENST00000310441 ERCC6Q03468 1493 aa19.17■□□□□ 0.66
HCFC1-201ENST00000310441 GZF1Q9H116 711 aaPredicted RBP19.17■□□□□ 0.66
HCFC1-201ENST00000310441 TPD52L1Q16890 204 aaPredicted RBP19.17■□□□□ 0.66
HCFC1-201ENST00000310441 ROCK2O75116 1388 aaKnown RBP19.17■□□□□ 0.66
HCFC1-201ENST00000310441 RBM19Q9Y4C8 960 aaKnown RBP19.16■□□□□ 0.66
HCFC1-201ENST00000310441 TRIM6-TRIM34B2RNG4 842 aa19.15■□□□□ 0.66
HCFC1-201ENST00000310441 IPO7O95373 1038 aaKnown RBP19.15■□□□□ 0.66
HCFC1-201ENST00000310441 RRP12Q5JTH9 1297 aaKnown RBP19.15■□□□□ 0.66
HCFC1-201ENST00000310441 HOOK1Q9UJC3 728 aaKnown RBP19.15■□□□□ 0.66
HCFC1-201ENST00000310441 NOM1Q5C9Z4 860 aaKnown RBP19.15■□□□□ 0.66
HCFC1-201ENST00000310441 TAF7LQ5H9L4 462 aa19.14■□□□□ 0.66
HCFC1-201ENST00000310441 DCAF11Q8TEB1 546 aa19.14■□□□□ 0.66
HCFC1-201ENST00000310441 EIF4G1Q04637 1599 aaKnown RBP19.14■□□□□ 0.65
HCFC1-201ENST00000310441 ANKRD20A12PQ8NF67 263 aa19.14■□□□□ 0.65
HCFC1-201ENST00000310441 SENP3Q9H4L4 574 aaPredicted RBP19.14■□□□□ 0.65
HCFC1-201ENST00000310441 IPO9Q96P70 1041 aaKnown RBP19.13■□□□□ 0.65
HCFC1-201ENST00000310441 CDR1P51861 262 aa19.13■□□□□ 0.65
HCFC1-201ENST00000310441 SF3A1Q15459 793 aaKnown RBP19.12■□□□□ 0.65
HCFC1-201ENST00000310441 SETD5Q9C0A6 1442 aa19.12■□□□□ 0.65
HCFC1-201ENST00000310441 SLKQ9H2G2 1235 aaPredicted RBP19.11■□□□□ 0.65
HCFC1-201ENST00000310441 H3BQV1 296 aa19.1■□□□□ 0.65
HCFC1-201ENST00000310441 IFFO2Q5TF58 517 aa19.1■□□□□ 0.65
HCFC1-201ENST00000310441 BAZ1AQ9NRL2 1556 aaPredicted RBP19.09■□□□□ 0.65
HCFC1-201ENST00000310441 MARCH6O60337 910 aa19.08■□□□□ 0.64
HCFC1-201ENST00000310441 PDE3BQ13370 1112 aa19.08■□□□□ 0.64
HCFC1-201ENST00000310441 ACBD3Q9H3P7 528 aa19.07■□□□□ 0.64
HCFC1-201ENST00000310441 G3V3G9 751 aa19.07■□□□□ 0.64
HCFC1-201ENST00000310441 DCAF8Q5TAQ9 597 aa19.07■□□□□ 0.64
HCFC1-201ENST00000310441 ANO8Q9HCE9 1232 aaPredicted RBP19.07■□□□□ 0.64
HCFC1-201ENST00000310441 TCEAL9Q9UHQ7 104 aa19.07■□□□□ 0.64
HCFC1-201ENST00000310441 ARID3AQ99856 593 aa19.06■□□□□ 0.64
HCFC1-201ENST00000310441 AKAP17AQ02040 695 aaKnown RBP19.06■□□□□ 0.64
HCFC1-201ENST00000310441 CREBRFQ8IUR6 639 aa19.06■□□□□ 0.64
HCFC1-201ENST00000310441 AK7Q96M32 723 aa19.06■□□□□ 0.64
HCFC1-201ENST00000310441 BECN2A8MW95 431 aa19.06■□□□□ 0.64
HCFC1-201ENST00000310441 PES1O00541 588 aaKnown RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms