RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 HSP90AB1P08238 724 aaKnown RBP24.76■■□□□ 1.55
USP48-201ENST00000308271 ATAD2BQ9ULI0 1458 aa24.75■■□□□ 1.55
USP48-201ENST00000308271 STAG3Q9UJ98 1225 aa24.75■■□□□ 1.55
USP48-201ENST00000308271 KIF15Q9NS87 1388 aa24.74■■□□□ 1.55
USP48-201ENST00000308271 PTMAP06454 111 aaKnown RBP24.74■■□□□ 1.55
USP48-201ENST00000308271 RRP1P56182 461 aaKnown RBP24.73■■□□□ 1.55
USP48-201ENST00000308271 CHMP4BQ9H444 224 aaKnown RBP24.73■■□□□ 1.55
USP48-201ENST00000308271 MYBBP1AQ9BQG0 1328 aaKnown RBP24.72■■□□□ 1.55
USP48-201ENST00000308271 ARID4BQ4LE39 1312 aaPredicted RBP24.72■■□□□ 1.55
USP48-201ENST00000308271 GSE1Q14687 1217 aa24.72■■□□□ 1.55
USP48-201ENST00000308271 TNNT2P45379 298 aaPredicted RBP24.71■■□□□ 1.55
USP48-201ENST00000308271 PNNQ9H307 717 aaKnown RBP24.71■■□□□ 1.55
USP48-201ENST00000308271 PHLDB1Q86UU1 1377 aa24.71■■□□□ 1.55
USP48-201ENST00000308271 MAPK8IP3Q9UPT6 1336 aa24.7■■□□□ 1.54
USP48-201ENST00000308271 CASC1Q6TDU7 716 aa24.7■■□□□ 1.54
USP48-201ENST00000308271 SLKQ9H2G2 1235 aaPredicted RBP24.7■■□□□ 1.54
USP48-201ENST00000308271 EXOC6Q8TAG9 804 aa24.69■■□□□ 1.54
USP48-201ENST00000308271 UACAQ9BZF9 1416 aa24.67■■□□□ 1.54
USP48-201ENST00000308271 NUP155O75694 1391 aa24.67■■□□□ 1.54
USP48-201ENST00000308271 GOLGA2Q08379 1002 aa24.67■■□□□ 1.54
USP48-201ENST00000308271 ANKRD30AQ9BXX3 1397 aa24.66■■□□□ 1.54
USP48-201ENST00000308271 CNTLNQ9NXG0 1405 aa24.66■■□□□ 1.54
USP48-201ENST00000308271 NPM1P06748 294 aaKnown RBP eCLIP24.66■■□□□ 1.54
USP48-201ENST00000308271 DNTTIP2Q5QJE6 756 aaKnown RBP24.65■■□□□ 1.54
USP48-201ENST00000308271 CCDC7Q96M83 1385 aa24.65■■□□□ 1.54
USP48-201ENST00000308271 CENPQQ7L2Z9 268 aaPredicted RBP24.64■■□□□ 1.54
USP48-201ENST00000308271 FAM161AQ3B820 660 aa24.63■■□□□ 1.53
USP48-201ENST00000308271 SPRYD3Q8NCJ5 442 aa24.62■■□□□ 1.53
USP48-201ENST00000308271 LRRC9Q6ZRR7 1453 aa24.62■■□□□ 1.53
USP48-201ENST00000308271 RWDD1Q9H446 243 aaPredicted RBP24.62■■□□□ 1.53
USP48-201ENST00000308271 GOLGA6L3A6NEY3 463 aa24.61■■□□□ 1.53
USP48-201ENST00000308271 RSPH6AQ9H0K4 717 aa24.61■■□□□ 1.53
USP48-201ENST00000308271 MSNP26038 577 aaKnown RBP24.61■■□□□ 1.53
USP48-201ENST00000308271 PTMSP20962 102 aa24.6■■□□□ 1.53
USP48-201ENST00000308271 ERICH3Q5RHP9 1530 aa24.6■■□□□ 1.53
USP48-201ENST00000308271 PMFBP1Q8TBY8 1022 aa24.59■■□□□ 1.53
USP48-201ENST00000308271 WASHC2AQ641Q2 1341 aa24.59■■□□□ 1.53
USP48-201ENST00000308271 GBP4Q96PP9 640 aa24.59■■□□□ 1.53
USP48-201ENST00000308271 FGD6Q6ZV73 1430 aa24.59■■□□□ 1.53
USP48-201ENST00000308271 ARAP1Q96P48 1450 aa24.58■■□□□ 1.53
USP48-201ENST00000308271 USP47Q96K76 1375 aa24.58■■□□□ 1.52
USP48-201ENST00000308271 GZF1Q9H116 711 aaPredicted RBP24.57■■□□□ 1.52
USP48-201ENST00000308271 ST20-MTHFSA0A0A6YYL1 179 aa24.56■■□□□ 1.52
USP48-201ENST00000308271 IGF1RP08069 1367 aa24.55■■□□□ 1.52
USP48-201ENST00000308271 KIF7Q2M1P5 1343 aa24.54■■□□□ 1.52
USP48-201ENST00000308271 MORC1Q86VD1 984 aa24.54■■□□□ 1.52
USP48-201ENST00000308271 TDRD9Q8NDG6 1382 aaKnown RBP24.54■■□□□ 1.52
USP48-201ENST00000308271 CADPSQ9ULU8 1353 aa24.54■■□□□ 1.52
USP48-201ENST00000308271 CFAP44Q96MT7 982 aa24.52■■□□□ 1.52
USP48-201ENST00000308271 CRBNQ96SW2 442 aa24.52■■□□□ 1.52
USP48-201ENST00000308271 SLC4A3P48751 1232 aa24.52■■□□□ 1.52
USP48-201ENST00000308271 U2SURPO15042 1029 aaKnown RBP24.51■■□□□ 1.51
USP48-201ENST00000308271 PLIN1O60240 522 aa24.51■■□□□ 1.51
USP48-201ENST00000308271 ESF1Q9H501 851 aaKnown RBP24.5■■□□□ 1.51
USP48-201ENST00000308271 IPO8O15397 1037 aaKnown RBP24.46■■□□□ 1.51
USP48-201ENST00000308271 MYOM3Q5VTT5 1437 aa24.46■■□□□ 1.51
USP48-201ENST00000308271 SYNJ1O43426 1573 aa24.46■■□□□ 1.51
USP48-201ENST00000308271 CENPJQ9HC77 1338 aaPredicted RBP24.46■■□□□ 1.51
USP48-201ENST00000308271 ERCC6Q03468 1493 aa24.46■■□□□ 1.51
USP48-201ENST00000308271 PLPPR3Q6T4P5 718 aa24.45■■□□□ 1.5
USP48-201ENST00000308271 PAK3O75914 559 aaPredicted RBP24.43■■□□□ 1.5
USP48-201ENST00000308271 PRXQ9BXM0 1461 aa24.42■■□□□ 1.5
USP48-201ENST00000308271 WDR97A6NE52 1622 aa24.42■■□□□ 1.5
USP48-201ENST00000308271 CUX1P39880 1505 aa24.42■■□□□ 1.5
USP48-201ENST00000308271 MSH5O43196 834 aa24.41■■□□□ 1.5
USP48-201ENST00000308271 MFAP1P55081 439 aaKnown RBP24.41■■□□□ 1.5
USP48-201ENST00000308271 PANK3Q9H999 370 aa24.4■■□□□ 1.5
USP48-201ENST00000308271 NFKBIBQ15653 356 aa24.4■■□□□ 1.5
USP48-201ENST00000308271 CGNL1Q0VF96 1302 aa24.39■■□□□ 1.5
USP48-201ENST00000308271 KANK1Q14678 1352 aa24.38■■□□□ 1.49
USP48-201ENST00000308271 CCDC146Q8IYE0 955 aa24.38■■□□□ 1.49
USP48-201ENST00000308271 CASKIN1Q8WXD9 1431 aa24.37■■□□□ 1.49
USP48-201ENST00000308271 DDX11L8A8MPP1 907 aa24.36■■□□□ 1.49
USP48-201ENST00000308271 PLCB2Q00722 1185 aa24.36■■□□□ 1.49
USP48-201ENST00000308271 ITPRIPQ8IWB1 547 aa24.36■■□□□ 1.49
USP48-201ENST00000308271 CARMIL2Q6F5E8 1435 aa24.36■■□□□ 1.49
USP48-201ENST00000308271 BRD4O60885 1362 aaPredicted RBP24.35■■□□□ 1.49
USP48-201ENST00000308271 EIF3AQ14152 1382 aaKnown RBP24.35■■□□□ 1.49
USP48-201ENST00000308271 HSP90AA2PQ14568 343 aaPredicted RBP24.35■■□□□ 1.49
USP48-201ENST00000308271 U2AF1L5P0DN76 240 aaPredicted RBP24.34■■□□□ 1.49
USP48-201ENST00000308271 U2AF1Q01081 240 aaKnown RBP eCLIP24.34■■□□□ 1.491e-6■■■□□ 16.8
USP48-201ENST00000308271 E9PSI1 815 aa24.34■■□□□ 1.49
USP48-201ENST00000308271 RSPH4AQ5TD94 716 aa24.33■■□□□ 1.49
USP48-201ENST00000308271 CHAF1AQ13111 956 aaPredicted RBP24.33■■□□□ 1.48
USP48-201ENST00000308271 CLUAP1Q96AJ1 413 aa24.32■■□□□ 1.48
USP48-201ENST00000308271 POGKQ9P215 609 aa24.32■■□□□ 1.48
USP48-201ENST00000308271 SMG6Q86US8 1419 aaKnown RBP24.31■■□□□ 1.48
USP48-201ENST00000308271 TPRNQ4KMQ1 711 aa24.31■■□□□ 1.48
USP48-201ENST00000308271 PDS5BQ9NTI5 1447 aa24.3■■□□□ 1.48
USP48-201ENST00000308271 SENP3Q9H4L4 574 aaPredicted RBP24.3■■□□□ 1.48
USP48-201ENST00000308271 HAP1P54257 671 aaPredicted RBP24.3■■□□□ 1.48
USP48-201ENST00000308271 CCDC144AA2RUR9 1427 aa24.29■■□□□ 1.48
USP48-201ENST00000308271 MCCP23508 829 aa24.29■■□□□ 1.48
USP48-201ENST00000308271 NGEFQ8N5V2 710 aa24.29■■□□□ 1.48
USP48-201ENST00000308271 SMC4Q9NTJ3 1288 aa24.29■■□□□ 1.48
USP48-201ENST00000308271 AKNAQ7Z591 1439 aa24.29■■□□□ 1.48
USP48-201ENST00000308271 FYCO1Q9BQS8 1478 aa24.28■■□□□ 1.48
USP48-201ENST00000308271 HFM1A2PYH4 1435 aa24.27■■□□□ 1.48
USP48-201ENST00000308271 NCOA2Q15596 1464 aa24.27■■□□□ 1.48
USP48-201ENST00000308271 FGD5Q6ZNL6 1462 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms