RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PCF11O94913 1555 aaKnown RBP18.15■□□□□ 0.5
SKA3-201ENST00000298260 L3MBTL2Q969R5 705 aa18.15■□□□□ 0.5
SKA3-201ENST00000298260 EXOC6Q8TAG9 804 aa18.13■□□□□ 0.49
SKA3-201ENST00000298260 NCOA2Q15596 1464 aa18.13■□□□□ 0.49
SKA3-201ENST00000298260 PDE4AP27815 886 aa18.13■□□□□ 0.49
SKA3-201ENST00000298260 MAP3K1Q13233 1512 aa18.12■□□□□ 0.49
SKA3-201ENST00000298260 SMG6Q86US8 1419 aaKnown RBP18.11■□□□□ 0.49
SKA3-201ENST00000298260 KIF7Q2M1P5 1343 aa18.11■□□□□ 0.49
SKA3-201ENST00000298260 NBPF8Q3BBV2 869 aa18.1■□□□□ 0.49
SKA3-201ENST00000298260 FGD6Q6ZV73 1430 aa18.09■□□□□ 0.49
SKA3-201ENST00000298260 WASHC2CQ9Y4E1 1318 aa18.09■□□□□ 0.49
SKA3-201ENST00000298260 TARBP1Q13395 1621 aaKnown RBP18.09■□□□□ 0.49
SKA3-201ENST00000298260 NAIPQ13075 1403 aa18.08■□□□□ 0.49
SKA3-201ENST00000298260 PTPN23Q9H3S7 1636 aa18.07■□□□□ 0.48
SKA3-201ENST00000298260 HFM1A2PYH4 1435 aa18.07■□□□□ 0.48
SKA3-201ENST00000298260 RNF123Q5XPI4 1314 aa18.07■□□□□ 0.48
SKA3-201ENST00000298260 NCOA1Q15788 1441 aa18.06■□□□□ 0.48
SKA3-201ENST00000298260 ARID3CA6NKF2 412 aa18.05■□□□□ 0.48
SKA3-201ENST00000298260 FRAT1Q92837 279 aaPredicted RBP18.05■□□□□ 0.48
SKA3-201ENST00000298260 GSE1Q14687 1217 aa18.04■□□□□ 0.48
SKA3-201ENST00000298260 BACH2Q9BYV9 841 aa18.04■□□□□ 0.48
SKA3-201ENST00000298260 WDR62O43379 1518 aa18.03■□□□□ 0.48
SKA3-201ENST00000298260 CFAP43Q8NDM7 1665 aa18.03■□□□□ 0.48
SKA3-201ENST00000298260 THOC2Q8NI27 1593 aaKnown RBP18.02■□□□□ 0.48
SKA3-201ENST00000298260 DENND4BO75064 1496 aaPredicted RBP18.02■□□□□ 0.47
SKA3-201ENST00000298260 ABCA5Q8WWZ7 1642 aa18.01■□□□□ 0.47
SKA3-201ENST00000298260 USP35Q9P2H5 1018 aa18.01■□□□□ 0.47
SKA3-201ENST00000298260 MTUS2Q5JR59 1369 aa18.01■□□□□ 0.47
SKA3-201ENST00000298260 NFKBIBQ15653 356 aa18.01■□□□□ 0.47
SKA3-201ENST00000298260 ZNF326Q5BKZ1 582 aaKnown RBP18■□□□□ 0.47
SKA3-201ENST00000298260 PLIN1O60240 522 aa17.99■□□□□ 0.47
SKA3-201ENST00000298260 FMN1Q68DA7 1419 aa17.98■□□□□ 0.47
SKA3-201ENST00000298260 PPM1GO15355 546 aaPredicted RBP17.98■□□□□ 0.47
SKA3-201ENST00000298260 TCERG1O14776 1098 aaKnown RBP17.97■□□□□ 0.47
SKA3-201ENST00000298260 RRP1P56182 461 aaKnown RBP17.97■□□□□ 0.47
SKA3-201ENST00000298260 MPHOSPH9Q99550 1183 aa17.97■□□□□ 0.47
SKA3-201ENST00000298260 IFT140Q96RY7 1462 aa17.96■□□□□ 0.47
SKA3-201ENST00000298260 TMC1Q8TDI8 760 aa17.95■□□□□ 0.46
SKA3-201ENST00000298260 CHMP7Q8WUX9 453 aaPredicted RBP17.95■□□□□ 0.46
SKA3-201ENST00000298260 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.95■□□□□ 0.46
SKA3-201ENST00000298260 PNISRQ8TF01 805 aaKnown RBP17.94■□□□□ 0.46
SKA3-201ENST00000298260 SNAPC4Q5SXM2 1469 aa17.94■□□□□ 0.46
SKA3-201ENST00000298260 DCAF11Q8TEB1 546 aa17.93■□□□□ 0.46
SKA3-201ENST00000298260 KDM6BO15054 1643 aa17.93■□□□□ 0.46
SKA3-201ENST00000298260 DHX29Q7Z478 1369 aaKnown RBP17.92■□□□□ 0.46
SKA3-201ENST00000298260 EIF4G3O43432 1585 aaKnown RBP17.92■□□□□ 0.46
SKA3-201ENST00000298260 PBRM1Q86U86 1689 aa17.91■□□□□ 0.46
SKA3-201ENST00000298260 GRIN2BQ13224 1484 aa17.91■□□□□ 0.46
SKA3-201ENST00000298260 FRAT2O75474 233 aaPredicted RBP17.9■□□□□ 0.46
SKA3-201ENST00000298260 RCAN3Q9UKA8 241 aa17.9■□□□□ 0.46
SKA3-201ENST00000298260 CDCA7LQ96GN5 454 aa17.9■□□□□ 0.46
SKA3-201ENST00000298260 CASKIN1Q8WXD9 1431 aa17.89■□□□□ 0.45
SKA3-201ENST00000298260 FYCO1Q9BQS8 1478 aa17.88■□□□□ 0.45
SKA3-201ENST00000298260 CUL7Q14999 1698 aa17.88■□□□□ 0.45
SKA3-201ENST00000298260 SPATA31E1Q6ZUB1 1445 aa17.85■□□□□ 0.45
SKA3-201ENST00000298260 MYOM3Q5VTT5 1437 aa17.84■□□□□ 0.45
SKA3-201ENST00000298260 ARXQ96QS3 562 aa17.84■□□□□ 0.45
SKA3-201ENST00000298260 DAXXQ9UER7 740 aaPredicted RBP17.83■□□□□ 0.45
SKA3-201ENST00000298260 CRBNQ96SW2 442 aa17.83■□□□□ 0.44
SKA3-201ENST00000298260 MS4A1P11836 297 aa17.82■□□□□ 0.44
SKA3-201ENST00000298260 ADAMTS12P58397 1594 aa17.82■□□□□ 0.44
SKA3-201ENST00000298260 C20orf194Q5TEA3 1177 aa17.81■□□□□ 0.44
SKA3-201ENST00000298260 DDRGK1Q96HY6 314 aa17.79■□□□□ 0.44
SKA3-201ENST00000298260 SLC4A1APQ9BWU0 796 aaKnown RBP17.78■□□□□ 0.44
SKA3-201ENST00000298260 CTTNBP2Q8WZ74 1663 aa17.78■□□□□ 0.44
SKA3-201ENST00000298260 PKNOX2Q96KN3 472 aa17.77■□□□□ 0.44
SKA3-201ENST00000298260 BCORL1Q5H9F3 1711 aa17.77■□□□□ 0.44
SKA3-201ENST00000298260 USP47Q96K76 1375 aa17.76■□□□□ 0.43
SKA3-201ENST00000298260 ANKRD30BQ9BXX2 1392 aa17.76■□□□□ 0.43
SKA3-201ENST00000298260 TEX14Q8IWB6 1497 aa17.75■□□□□ 0.43
SKA3-201ENST00000298260 GRIN2AQ12879 1464 aa17.75■□□□□ 0.43
SKA3-201ENST00000298260 RSPH6AQ9H0K4 717 aa17.75■□□□□ 0.43
SKA3-201ENST00000298260 RRAGDQ9NQL2 400 aaPredicted RBP17.75■□□□□ 0.43
SKA3-201ENST00000298260 POGKQ9P215 609 aa17.75■□□□□ 0.43
SKA3-201ENST00000298260 RGS3P49796 1198 aa17.74■□□□□ 0.43
SKA3-201ENST00000298260 LRRIQ1Q96JM4 1722 aa17.74■□□□□ 0.43
SKA3-201ENST00000298260 HECW1Q76N89 1606 aa17.73■□□□□ 0.43
SKA3-201ENST00000298260 RPRD2Q5VT52 1461 aaKnown RBP17.72■□□□□ 0.43
SKA3-201ENST00000298260 FAM43AQ8N2R8 423 aa17.72■□□□□ 0.43
SKA3-201ENST00000298260 LRPPRCP42704 1394 aaKnown RBP17.7■□□□□ 0.42
SKA3-201ENST00000298260 MAGI3Q5TCQ9 1506 aa17.69■□□□□ 0.42
SKA3-201ENST00000298260 IQGAP2Q13576 1575 aa17.68■□□□□ 0.42
SKA3-201ENST00000298260 C8orf34Q49A92 452 aa17.68■□□□□ 0.42
SKA3-201ENST00000298260 JPH4Q96JJ6 628 aa17.68■□□□□ 0.42
SKA3-201ENST00000298260 SYNJ2O15056 1496 aa17.68■□□□□ 0.42
SKA3-201ENST00000298260 ZNF644Q9H582 1327 aaPredicted RBP17.68■□□□□ 0.42
SKA3-201ENST00000298260 VSIG10Q8N0Z9 540 aa17.67■□□□□ 0.42
SKA3-201ENST00000298260 KDM2AQ9Y2K7 1162 aa17.67■□□□□ 0.42
SKA3-201ENST00000298260 CEP170Q5SW79 1584 aa17.67■□□□□ 0.42
SKA3-201ENST00000298260 MYBBP1AQ9BQG0 1328 aaKnown RBP17.66■□□□□ 0.42
SKA3-201ENST00000298260 ST20-MTHFSA0A0A6YYL1 179 aa17.66■□□□□ 0.42
SKA3-201ENST00000298260 MAGI1Q96QZ7 1491 aaPredicted RBP17.65■□□□□ 0.42
SKA3-201ENST00000298260 SLKQ9H2G2 1235 aaPredicted RBP17.65■□□□□ 0.42
SKA3-201ENST00000298260 POLR1AO95602 1720 aaPredicted RBP17.64■□□□□ 0.42
SKA3-201ENST00000298260 SUPT6HQ7KZ85 1726 aaKnown RBP17.64■□□□□ 0.42
SKA3-201ENST00000298260 EFCAB5A4FU69 1503 aa17.64■□□□□ 0.41
SKA3-201ENST00000298260 GCC2Q8IWJ2 1684 aa17.63■□□□□ 0.41
SKA3-201ENST00000298260 CARD11Q9BXL7 1154 aa17.63■□□□□ 0.41
SKA3-201ENST00000298260 FAM161AQ3B820 660 aa17.62■□□□□ 0.41
SKA3-201ENST00000298260 KIF15Q9NS87 1388 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms