RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 AEBP2Q6ZN18 517 aaPredicted RBP17.44■□□□□ 0.38
HPS3-201ENST00000296051 TOP2AP11388 1531 aaKnown RBP17.44■□□□□ 0.38
HPS3-201ENST00000296051 SLC4A3P48751 1232 aa17.44■□□□□ 0.38
HPS3-201ENST00000296051 FANCIQ9NVI1 1328 aa17.44■□□□□ 0.38
HPS3-201ENST00000296051 HNRNPMP52272 730 aaKnown RBP eCLIP17.43■□□□□ 0.38
HPS3-201ENST00000296051 SPRYD3Q8NCJ5 442 aa17.43■□□□□ 0.38
HPS3-201ENST00000296051 FRAT1Q92837 279 aaPredicted RBP17.43■□□□□ 0.38
HPS3-201ENST00000296051 PAK3O75914 559 aaPredicted RBP17.42■□□□□ 0.38
HPS3-201ENST00000296051 BECN1Q14457 450 aa17.42■□□□□ 0.38
HPS3-201ENST00000296051 MPHOSPH9Q99550 1183 aa17.42■□□□□ 0.38
HPS3-201ENST00000296051 RCAN3Q9UKA8 241 aa17.41■□□□□ 0.38
HPS3-201ENST00000296051 PKD2Q13563 968 aa17.41■□□□□ 0.38
HPS3-201ENST00000296051 NUDCQ9Y266 331 aa17.41■□□□□ 0.38
HPS3-201ENST00000296051 U2SURPO15042 1029 aaKnown RBP17.41■□□□□ 0.38
HPS3-201ENST00000296051 NAP1L5Q96NT1 182 aaPredicted RBP17.41■□□□□ 0.38
HPS3-201ENST00000296051 NUTM2DQ5VT03 806 aaPredicted RBP17.4■□□□□ 0.38
HPS3-201ENST00000296051 PRKRIP1Q9H875 184 aaPredicted RBP17.4■□□□□ 0.38
HPS3-201ENST00000296051 SMARCA4P51532 1647 aa17.38■□□□□ 0.37
HPS3-201ENST00000296051 WASHC2CQ9Y4E1 1318 aa17.38■□□□□ 0.37
HPS3-201ENST00000296051 ARHGAP35Q9NRY4 1499 aa17.38■□□□□ 0.37
HPS3-201ENST00000296051 MYH16Q9H6N6 1097 aa17.37■□□□□ 0.37
HPS3-201ENST00000296051 SPAG9O60271 1321 aaKnown RBP17.37■□□□□ 0.37
HPS3-201ENST00000296051 SLKQ9H2G2 1235 aaPredicted RBP17.36■□□□□ 0.37
HPS3-201ENST00000296051 MAPK8IP3Q9UPT6 1336 aa17.36■□□□□ 0.37
HPS3-201ENST00000296051 CCDC9Q9Y3X0 531 aaKnown RBP17.36■□□□□ 0.37
HPS3-201ENST00000296051 PLIN1O60240 522 aa17.36■□□□□ 0.37
HPS3-201ENST00000296051 NUTM2FA1L443 756 aa17.35■□□□□ 0.37
HPS3-201ENST00000296051 MSH5O43196 834 aa17.35■□□□□ 0.37
HPS3-201ENST00000296051 TRIM44Q96DX7 344 aaPredicted RBP17.35■□□□□ 0.37
HPS3-201ENST00000296051 FAM69CQ0P6D2 419 aa17.34■□□□□ 0.37
HPS3-201ENST00000296051 EID1Q9Y6B2 187 aa17.34■□□□□ 0.37
HPS3-201ENST00000296051 EXOC6Q8TAG9 804 aa17.34■□□□□ 0.37
HPS3-201ENST00000296051 TCERG1O14776 1098 aaKnown RBP17.33■□□□□ 0.36
HPS3-201ENST00000296051 CSB-PGBD3P0DP91 1061 aa17.32■□□□□ 0.36
HPS3-201ENST00000296051 GZF1Q9H116 711 aaPredicted RBP17.31■□□□□ 0.36
HPS3-201ENST00000296051 NUP155O75694 1391 aa17.31■□□□□ 0.36
HPS3-201ENST00000296051 FHOD3Q2V2M9 1422 aa17.31■□□□□ 0.36
HPS3-201ENST00000296051 FANCD2Q9BXW9 1451 aa17.3■□□□□ 0.36
HPS3-201ENST00000296051 PDE4AP27815 886 aa17.3■□□□□ 0.36
HPS3-201ENST00000296051 PTPRGP23470 1445 aa17.3■□□□□ 0.36
HPS3-201ENST00000296051 NCLP19338 710 aaKnown RBP17.29■□□□□ 0.36
HPS3-201ENST00000296051 TMF1P82094 1093 aa17.29■□□□□ 0.36
HPS3-201ENST00000296051 CCDC184Q52MB2 194 aa17.29■□□□□ 0.36
HPS3-201ENST00000296051 TPRNQ4KMQ1 711 aa17.27■□□□□ 0.36
HPS3-201ENST00000296051 ANO8Q9HCE9 1232 aaPredicted RBP17.27■□□□□ 0.36
HPS3-201ENST00000296051 ZBED9Q6R2W3 1325 aa17.26■□□□□ 0.35
HPS3-201ENST00000296051 FMN1Q68DA7 1419 aa17.25■□□□□ 0.35
HPS3-201ENST00000296051 IL27Q8NEV9 243 aa17.24■□□□□ 0.35
HPS3-201ENST00000296051 WASHC2AQ641Q2 1341 aa17.23■□□□□ 0.35
HPS3-201ENST00000296051 KIF21BO75037 1637 aa17.22■□□□□ 0.35
HPS3-201ENST00000296051 FTSJ3Q8IY81 847 aaKnown RBP17.22■□□□□ 0.35
HPS3-201ENST00000296051 ZNF330Q9Y3S2 320 aaPredicted RBP17.22■□□□□ 0.35
HPS3-201ENST00000296051 MORC1Q86VD1 984 aa17.22■□□□□ 0.35
HPS3-201ENST00000296051 PHLDB1Q86UU1 1377 aa17.21■□□□□ 0.35
HPS3-201ENST00000296051 NGDNQ8NEJ9 315 aaKnown RBP17.21■□□□□ 0.35
HPS3-201ENST00000296051 ANKRD30AQ9BXX3 1397 aa17.2■□□□□ 0.34
HPS3-201ENST00000296051 HDGFL2Q7Z4V5 671 aaPredicted RBP17.2■□□□□ 0.34
HPS3-201ENST00000296051 ST20-MTHFSA0A0A6YYL1 179 aa17.19■□□□□ 0.34
HPS3-201ENST00000296051 RSPH4AQ5TD94 716 aa17.17■□□□□ 0.34
HPS3-201ENST00000296051 RRP1P56182 461 aaKnown RBP17.17■□□□□ 0.34
HPS3-201ENST00000296051 CCDC146Q8IYE0 955 aa17.16■□□□□ 0.34
HPS3-201ENST00000296051 KTN1Q86UP2 1357 aaKnown RBP17.16■□□□□ 0.34
HPS3-201ENST00000296051 CRBNQ96SW2 442 aa17.15■□□□□ 0.34
HPS3-201ENST00000296051 RAD54L2Q9Y4B4 1467 aa17.15■□□□□ 0.34
HPS3-201ENST00000296051 GSE1Q14687 1217 aa17.15■□□□□ 0.34
HPS3-201ENST00000296051 CLUAP1Q96AJ1 413 aa17.14■□□□□ 0.33
HPS3-201ENST00000296051 DNAJC5BQ9UF47 199 aa17.14■□□□□ 0.33
HPS3-201ENST00000296051 RALBP1Q15311 655 aa17.13■□□□□ 0.33
HPS3-201ENST00000296051 NLRP13Q86W25 1043 aa17.13■□□□□ 0.33
HPS3-201ENST00000296051 ARAP1Q96P48 1450 aa17.13■□□□□ 0.33
HPS3-201ENST00000296051 CCDC18Q5T9S5 1454 aa17.13■□□□□ 0.33
HPS3-201ENST00000296051 KIF7Q2M1P5 1343 aa17.12■□□□□ 0.33
HPS3-201ENST00000296051 RTF1Q92541 710 aaKnown RBP17.12■□□□□ 0.33
HPS3-201ENST00000296051 GOLGA6L22H0YM25 854 aa17.12■□□□□ 0.33
HPS3-201ENST00000296051 ARID3AQ99856 593 aa17.12■□□□□ 0.33
HPS3-201ENST00000296051 TRAK1Q9UPV9 953 aa17.12■□□□□ 0.33
HPS3-201ENST00000296051 LTV1Q96GA3 475 aaPredicted RBP17.12■□□□□ 0.33
HPS3-201ENST00000296051 AQRO60306 1485 aaKnown RBP eCLIP17.11■□□□□ 0.33
HPS3-201ENST00000296051 HSP90AB1P08238 724 aaKnown RBP17.1■□□□□ 0.33
HPS3-201ENST00000296051 BRPF3Q9ULD4 1205 aa17.1■□□□□ 0.33
HPS3-201ENST00000296051 OS9Q13438 667 aaPredicted RBP17.1■□□□□ 0.33
HPS3-201ENST00000296051 AKNAQ7Z591 1439 aa17.1■□□□□ 0.33
HPS3-201ENST00000296051 ROCK2O75116 1388 aaKnown RBP17.09■□□□□ 0.33
HPS3-201ENST00000296051 GOLGA2Q08379 1002 aa17.09■□□□□ 0.33
HPS3-201ENST00000296051 PNNQ9H307 717 aaKnown RBP17.09■□□□□ 0.33
HPS3-201ENST00000296051 WDR97A6NE52 1622 aa17.09■□□□□ 0.33
HPS3-201ENST00000296051 USP35Q9P2H5 1018 aa17.09■□□□□ 0.33
HPS3-201ENST00000296051 TAOK2Q9UL54 1235 aa17.09■□□□□ 0.33
HPS3-201ENST00000296051 CCDC7Q96M83 1385 aa17.08■□□□□ 0.32
HPS3-201ENST00000296051 L1TD1Q5T7N2 865 aaKnown RBP17.07■□□□□ 0.32
HPS3-201ENST00000296051 PTMAP06454 111 aaKnown RBP17.07■□□□□ 0.32
HPS3-201ENST00000296051 U2AF1L5P0DN76 240 aaPredicted RBP17.07■□□□□ 0.32
HPS3-201ENST00000296051 U2AF1Q01081 240 aaKnown RBP eCLIP17.07■□□□□ 0.32
HPS3-201ENST00000296051 DNTTIP2Q5QJE6 756 aaKnown RBP17.07■□□□□ 0.32
HPS3-201ENST00000296051 CDCA7LQ96GN5 454 aa17.07■□□□□ 0.32
HPS3-201ENST00000296051 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.05■□□□□ 0.32
HPS3-201ENST00000296051 FGD5Q6ZNL6 1462 aa17.05■□□□□ 0.32
HPS3-201ENST00000296051 IGF1RP08069 1367 aa17.05■□□□□ 0.32
HPS3-201ENST00000296051 HSCBQ8IWL3 235 aa17.05■□□□□ 0.32
HPS3-201ENST00000296051 BCL2L13Q9BXK5 485 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms