RNA–Protein interactions for RNA: ENST00000279027.8

SLC13A3-201, Transcript of solute carrier family 13 member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC13A3, Length 4,017 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC13A3-201ENST00000279027 TMC1Q8TDI8 760 aa16.22■□□□□ 0.19
SLC13A3-201ENST00000279027 KIF21AQ7Z4S6 1674 aa16.2■□□□□ 0.18
SLC13A3-201ENST00000279027 CCDC184Q52MB2 194 aa16.2■□□□□ 0.18
SLC13A3-201ENST00000279027 EHBP1L1Q8N3D4 1523 aa16.19■□□□□ 0.18
SLC13A3-201ENST00000279027 IQGAP2Q13576 1575 aa16.18■□□□□ 0.18
SLC13A3-201ENST00000279027 C11orf95C9JLR9 678 aaPredicted RBP16.18■□□□□ 0.18
SLC13A3-201ENST00000279027 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.17■□□□□ 0.18
SLC13A3-201ENST00000279027 SUPT6HQ7KZ85 1726 aaKnown RBP16.16■□□□□ 0.18
SLC13A3-201ENST00000279027 PLB1Q6P1J6 1458 aa16.16■□□□□ 0.18
SLC13A3-201ENST00000279027 CHGAP10645 457 aaKnown RBP16.16■□□□□ 0.18
SLC13A3-201ENST00000279027 IFT140Q96RY7 1462 aa16.16■□□□□ 0.18
SLC13A3-201ENST00000279027 TSHZ2Q9NRE2 1034 aa16.16■□□□□ 0.18
SLC13A3-201ENST00000279027 CTTNBP2Q8WZ74 1663 aa16.15■□□□□ 0.18
SLC13A3-201ENST00000279027 PTPN23Q9H3S7 1636 aa16.15■□□□□ 0.18
SLC13A3-201ENST00000279027 ANKRD30AQ9BXX3 1397 aa16.15■□□□□ 0.18
SLC13A3-201ENST00000279027 THOC2Q8NI27 1593 aaKnown RBP16.14■□□□□ 0.17
SLC13A3-201ENST00000279027 CFAP43Q8NDM7 1665 aa16.13■□□□□ 0.17
SLC13A3-201ENST00000279027 PRKRIP1Q9H875 184 aaPredicted RBP16.11■□□□□ 0.17
SLC13A3-201ENST00000279027 PTPRGP23470 1445 aa16.11■□□□□ 0.17
SLC13A3-201ENST00000279027 HECW1Q76N89 1606 aa16.11■□□□□ 0.17
SLC13A3-201ENST00000279027 KIAA0586Q9BVV6 1533 aa16.11■□□□□ 0.17
SLC13A3-201ENST00000279027 B4GALNT3Q6L9W6 998 aa16.1■□□□□ 0.17
SLC13A3-201ENST00000279027 DAPK1P53355 1430 aa16.1■□□□□ 0.17
SLC13A3-201ENST00000279027 MAGI3Q5TCQ9 1506 aa16.1■□□□□ 0.17
SLC13A3-201ENST00000279027 ST20-MTHFSA0A0A6YYL1 179 aa16.09■□□□□ 0.17
SLC13A3-201ENST00000279027 KIF7Q2M1P5 1343 aa16.09■□□□□ 0.17
SLC13A3-201ENST00000279027 CC2D1BQ5T0F9 858 aaKnown RBP16.08■□□□□ 0.17
SLC13A3-201ENST00000279027 ABCC5O15440 1437 aa16.08■□□□□ 0.16
SLC13A3-201ENST00000279027 ABCA5Q8WWZ7 1642 aa16.08■□□□□ 0.16
SLC13A3-201ENST00000279027 GRIN2AQ12879 1464 aa16.07■□□□□ 0.16
SLC13A3-201ENST00000279027 MIA2Q96PC5 1412 aa16.07■□□□□ 0.16
SLC13A3-201ENST00000279027 UGGT2Q9NYU1 1516 aa16.06■□□□□ 0.16
SLC13A3-201ENST00000279027 CCDC7Q96M83 1385 aa16.06■□□□□ 0.16
SLC13A3-201ENST00000279027 TROQ12816 1431 aaPredicted RBP16.05■□□□□ 0.16
SLC13A3-201ENST00000279027 ANKRD50Q9ULJ7 1429 aa16.04■□□□□ 0.16
SLC13A3-201ENST00000279027 USP47Q96K76 1375 aa16.03■□□□□ 0.16
SLC13A3-201ENST00000279027 NUP153P49790 1475 aaKnown RBP16.02■□□□□ 0.15
SLC13A3-201ENST00000279027 ANKRD30BQ9BXX2 1392 aa16.01■□□□□ 0.15
SLC13A3-201ENST00000279027 KIF15Q9NS87 1388 aa16.01■□□□□ 0.15
SLC13A3-201ENST00000279027 ROCK2O75116 1388 aaKnown RBP16■□□□□ 0.15
SLC13A3-201ENST00000279027 TARBP1Q13395 1621 aaKnown RBP16■□□□□ 0.15
SLC13A3-201ENST00000279027 SAMD9Q5K651 1589 aa16■□□□□ 0.15
SLC13A3-201ENST00000279027 CCDC136Q96JN2 1154 aa15.99■□□□□ 0.15
SLC13A3-201ENST00000279027 ADAMTS12P58397 1594 aa15.99■□□□□ 0.15
SLC13A3-201ENST00000279027 RBM19Q9Y4C8 960 aaKnown RBP15.99■□□□□ 0.15
SLC13A3-201ENST00000279027 ARHGEF11O15085 1522 aa15.99■□□□□ 0.15
SLC13A3-201ENST00000279027 NPM1P06748 294 aaKnown RBP eCLIP15.96■□□□□ 0.15
SLC13A3-201ENST00000279027 NBPF1Q3BBV0 1214 aa15.96■□□□□ 0.15
SLC13A3-201ENST00000279027 CNTLNQ9NXG0 1405 aa15.96■□□□□ 0.15
SLC13A3-201ENST00000279027 CAMSAP2Q08AD1 1489 aa15.96■□□□□ 0.14
SLC13A3-201ENST00000279027 DISP1Q96F81 1524 aa15.95■□□□□ 0.14
SLC13A3-201ENST00000279027 SYNJ2O15056 1496 aa15.95■□□□□ 0.14
SLC13A3-201ENST00000279027 EFCAB2Q5VUJ9 269 aa15.95■□□□□ 0.14
SLC13A3-201ENST00000279027 WDR62O43379 1518 aa15.95■□□□□ 0.14
SLC13A3-201ENST00000279027 KDM6BO15054 1643 aa15.94■□□□□ 0.14
SLC13A3-201ENST00000279027 NCOA1Q15788 1441 aa15.94■□□□□ 0.14
SLC13A3-201ENST00000279027 NPM2Q86SE8 214 aaKnown RBP15.94■□□□□ 0.14
SLC13A3-201ENST00000279027 C9orf84Q5VXU9 1444 aa15.93■□□□□ 0.14
SLC13A3-201ENST00000279027 PBRM1Q86U86 1689 aa15.93■□□□□ 0.14
SLC13A3-201ENST00000279027 AFAP1Q8N556 730 aa15.93■□□□□ 0.14
SLC13A3-201ENST00000279027 PPP4R2Q9NY27 417 aa15.92■□□□□ 0.14
SLC13A3-201ENST00000279027 GPATCH8Q9UKJ3 1502 aaKnown RBP15.92■□□□□ 0.14
SLC13A3-201ENST00000279027 AKNAQ7Z591 1439 aa15.92■□□□□ 0.14
SLC13A3-201ENST00000279027 ROCK1Q13464 1354 aa15.91■□□□□ 0.14
SLC13A3-201ENST00000279027 MYT1Q01538 1121 aa15.91■□□□□ 0.14
SLC13A3-201ENST00000279027 KIAA1107Q9UPP5 1409 aa15.91■□□□□ 0.14
SLC13A3-201ENST00000279027 KIF3BO15066 747 aa15.91■□□□□ 0.14
SLC13A3-201ENST00000279027 KIAA0556O60303 1618 aa15.89■□□□□ 0.13
SLC13A3-201ENST00000279027 CCDC144AA2RUR9 1427 aa15.89■□□□□ 0.13
SLC13A3-201ENST00000279027 EIF4G3O43432 1585 aaKnown RBP15.89■□□□□ 0.13
SLC13A3-201ENST00000279027 TCOF1Q13428 1488 aaKnown RBP15.88■□□□□ 0.13
SLC13A3-201ENST00000279027 TNNT2P45379 298 aaPredicted RBP15.88■□□□□ 0.13
SLC13A3-201ENST00000279027 RAPGEF6Q8TEU7 1601 aa15.88■□□□□ 0.13
SLC13A3-201ENST00000279027 MAGI1Q96QZ7 1491 aaPredicted RBP15.88■□□□□ 0.13
SLC13A3-201ENST00000279027 SPAG9O60271 1321 aaKnown RBP15.88■□□□□ 0.13
SLC13A3-201ENST00000279027 GGT6Q6P531 493 aa15.88■□□□□ 0.13
SLC13A3-201ENST00000279027 KNSTRNQ9Y448 316 aa15.87■□□□□ 0.13
SLC13A3-201ENST00000279027 RPRD2Q5VT52 1461 aaKnown RBP15.87■□□□□ 0.13
SLC13A3-201ENST00000279027 NUTM2DQ5VT03 806 aaPredicted RBP15.86■□□□□ 0.13
SLC13A3-201ENST00000279027 WDR43Q15061 677 aaKnown RBP eCLIP15.86■□□□□ 0.13
SLC13A3-201ENST00000279027 ATP10BO94823 1461 aa15.86■□□□□ 0.13
SLC13A3-201ENST00000279027 TMF1P82094 1093 aa15.85■□□□□ 0.13
SLC13A3-201ENST00000279027 PANK3Q9H999 370 aa15.85■□□□□ 0.13
SLC13A3-201ENST00000279027 RSPH4AQ5TD94 716 aa15.84■□□□□ 0.13
SLC13A3-201ENST00000279027 LRRIQ1Q96JM4 1722 aa15.84■□□□□ 0.13
SLC13A3-201ENST00000279027 ZBED9Q6R2W3 1325 aa15.83■□□□□ 0.12
SLC13A3-201ENST00000279027 ARHGAP5Q13017 1502 aa15.83■□□□□ 0.12
SLC13A3-201ENST00000279027 SAFB2Q14151 953 aaKnown RBP eCLIP15.81■□□□□ 0.12
SLC13A3-201ENST00000279027 NUDCQ9Y266 331 aa15.81■□□□□ 0.12
SLC13A3-201ENST00000279027 NEUROD2Q15784 382 aa15.81■□□□□ 0.12
SLC13A3-201ENST00000279027 ANP32EQ9BTT0 268 aa15.8■□□□□ 0.12
SLC13A3-201ENST00000279027 KTN1Q86UP2 1357 aaKnown RBP15.8■□□□□ 0.12
SLC13A3-201ENST00000279027 KIF14Q15058 1648 aa15.79■□□□□ 0.12
SLC13A3-201ENST00000279027 PLPPR3Q6T4P5 718 aa15.78■□□□□ 0.12
SLC13A3-201ENST00000279027 CEP170Q5SW79 1584 aa15.78■□□□□ 0.12
SLC13A3-201ENST00000279027 DENND4BO75064 1496 aaPredicted RBP15.78■□□□□ 0.12
SLC13A3-201ENST00000279027 RALBP1Q15311 655 aa15.77■□□□□ 0.12
SLC13A3-201ENST00000279027 PLIN1O60240 522 aa15.77■□□□□ 0.11
SLC13A3-201ENST00000279027 NBR1Q14596 966 aa15.77■□□□□ 0.11
SLC13A3-201ENST00000279027 PZPP20742 1482 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms