RNA–Protein interactions for RNA: ENST00000261799.8

PDGFRB-201, Transcript of platelet derived growth factor receptor beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRB, Length 5,717 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-201ENST00000261799 DCAF8Q5TAQ9 597 aa17.56■□□□□ 0.4
PDGFRB-201ENST00000261799 ISY1Q9ULR0 285 aaKnown RBP17.56■□□□□ 0.4
PDGFRB-201ENST00000261799 TOP2AP11388 1531 aaKnown RBP17.55■□□□□ 0.4
PDGFRB-201ENST00000261799 MROH2BQ7Z745 1585 aa17.54■□□□□ 0.4
PDGFRB-201ENST00000261799 FANCD2Q9BXW9 1451 aa17.54■□□□□ 0.4
PDGFRB-201ENST00000261799 PKD2Q13563 968 aa17.53■□□□□ 0.4
PDGFRB-201ENST00000261799 DCAF8L1A6NGE4 600 aa17.53■□□□□ 0.4
PDGFRB-201ENST00000261799 CCDC18Q5T9S5 1454 aa17.53■□□□□ 0.4
PDGFRB-201ENST00000261799 FGD1P98174 961 aa17.52■□□□□ 0.39
PDGFRB-201ENST00000261799 FAM69CQ0P6D2 419 aa17.52■□□□□ 0.39
PDGFRB-201ENST00000261799 CHMP4AQ9BY43 222 aa17.52■□□□□ 0.39
PDGFRB-201ENST00000261799 PTPRGP23470 1445 aa17.52■□□□□ 0.39
PDGFRB-201ENST00000261799 HNRNPMP52272 730 aaKnown RBP eCLIP17.51■□□□□ 0.39
PDGFRB-201ENST00000261799 BECN1Q14457 450 aa17.5■□□□□ 0.39
PDGFRB-201ENST00000261799 EVA1CP58658 441 aa17.5■□□□□ 0.39
PDGFRB-201ENST00000261799 NUP155O75694 1391 aa17.5■□□□□ 0.39
PDGFRB-201ENST00000261799 KCNJ4P48050 445 aa17.49■□□□□ 0.39
PDGFRB-201ENST00000261799 PHF23Q9BUL5 403 aaPredicted RBP17.49■□□□□ 0.39
PDGFRB-201ENST00000261799 RAPGEF2Q9Y4G8 1499 aa17.49■□□□□ 0.39
PDGFRB-201ENST00000261799 CALD1Q05682 793 aaKnown RBP17.48■□□□□ 0.39
PDGFRB-201ENST00000261799 TERF2IPQ9NYB0 399 aa17.47■□□□□ 0.39
PDGFRB-201ENST00000261799 FRAT1Q92837 279 aaPredicted RBP17.46■□□□□ 0.39
PDGFRB-201ENST00000261799 TAOK2Q9UL54 1235 aa17.46■□□□□ 0.39
PDGFRB-201ENST00000261799 NAP1L2Q9ULW6 460 aaPredicted RBP17.46■□□□□ 0.39
PDGFRB-201ENST00000261799 ATAD2BQ9ULI0 1458 aa17.45■□□□□ 0.38
PDGFRB-201ENST00000261799 ROCK2O75116 1388 aaKnown RBP17.45■□□□□ 0.38
PDGFRB-201ENST00000261799 GOLGA6L22H0YM25 854 aa17.45■□□□□ 0.38
PDGFRB-201ENST00000261799 MSH5O43196 834 aa17.44■□□□□ 0.38
PDGFRB-201ENST00000261799 NUTM2DQ5VT03 806 aaPredicted RBP17.44■□□□□ 0.38
PDGFRB-201ENST00000261799 CLSTN1O94985 981 aa17.43■□□□□ 0.38
PDGFRB-201ENST00000261799 AMPHP49418 695 aa17.43■□□□□ 0.38
PDGFRB-201ENST00000261799 MYO15BQ96JP2 1530 aa17.42■□□□□ 0.38
PDGFRB-201ENST00000261799 SIN3AQ96ST3 1273 aa17.4■□□□□ 0.38
PDGFRB-201ENST00000261799 TAF7LQ5H9L4 462 aa17.4■□□□□ 0.38
PDGFRB-201ENST00000261799 UACAQ9BZF9 1416 aa17.4■□□□□ 0.38
PDGFRB-201ENST00000261799 DDRGK1Q96HY6 314 aa17.4■□□□□ 0.38
PDGFRB-201ENST00000261799 GTF2E1P29083 439 aaPredicted RBP17.39■□□□□ 0.37
PDGFRB-201ENST00000261799 SETD5Q9C0A6 1442 aa17.39■□□□□ 0.37
PDGFRB-201ENST00000261799 FOXD1Q16676 465 aa17.36■□□□□ 0.37
PDGFRB-201ENST00000261799 SMARCA4P51532 1647 aa17.36■□□□□ 0.37
PDGFRB-201ENST00000261799 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.36■□□□□ 0.37
PDGFRB-201ENST00000261799 KTN1Q86UP2 1357 aaKnown RBP17.35■□□□□ 0.37
PDGFRB-201ENST00000261799 WIZO95785 1651 aa17.35■□□□□ 0.37
PDGFRB-201ENST00000261799 FHOD3Q2V2M9 1422 aa17.35■□□□□ 0.37
PDGFRB-201ENST00000261799 HDAC5Q9UQL6 1122 aa17.34■□□□□ 0.37
PDGFRB-201ENST00000261799 ATF3P18847 181 aa17.34■□□□□ 0.37
PDGFRB-201ENST00000261799 IRX6P78412 446 aaPredicted RBP17.34■□□□□ 0.37
PDGFRB-201ENST00000261799 GORABQ5T7V8 394 aa17.34■□□□□ 0.37
PDGFRB-201ENST00000261799 STK31Q9BXU1 1019 aa17.34■□□□□ 0.37
PDGFRB-201ENST00000261799 CHMP3Q9Y3E7 222 aa17.34■□□□□ 0.37
PDGFRB-201ENST00000261799 NUTM2FA1L443 756 aa17.33■□□□□ 0.36
PDGFRB-201ENST00000261799 LTV1Q96GA3 475 aaPredicted RBP17.33■□□□□ 0.36
PDGFRB-201ENST00000261799 MCCP23508 829 aa17.33■□□□□ 0.36
PDGFRB-201ENST00000261799 SENP3-EIF4A1A0A087X0R7 540 aa17.32■□□□□ 0.36
PDGFRB-201ENST00000261799 VPS8Q8N3P4 1428 aa17.32■□□□□ 0.36
PDGFRB-201ENST00000261799 IPO8O15397 1037 aaKnown RBP17.32■□□□□ 0.36
PDGFRB-201ENST00000261799 U2AF1L5P0DN76 240 aaPredicted RBP17.32■□□□□ 0.36
PDGFRB-201ENST00000261799 U2AF1Q01081 240 aaKnown RBP eCLIP17.32■□□□□ 0.36
PDGFRB-201ENST00000261799 VGFO15240 615 aaPredicted RBP17.31■□□□□ 0.36
PDGFRB-201ENST00000261799 MPHOSPH9Q99550 1183 aa17.31■□□□□ 0.36
PDGFRB-201ENST00000261799 CFAP44Q96MT7 982 aa17.3■□□□□ 0.36
PDGFRB-201ENST00000261799 C1orf141Q5JVX7 400 aa17.3■□□□□ 0.36
PDGFRB-201ENST00000261799 TIMELESSQ9UNS1 1208 aa17.29■□□□□ 0.36
PDGFRB-201ENST00000261799 GAPVD1Q14C86 1478 aa17.29■□□□□ 0.36
PDGFRB-201ENST00000261799 LMOD3Q0VAK6 560 aa17.28■□□□□ 0.36
PDGFRB-201ENST00000261799 TPRNQ4KMQ1 711 aa17.28■□□□□ 0.36
PDGFRB-201ENST00000261799 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.28■□□□□ 0.36
PDGFRB-201ENST00000261799 ANP32EQ9BTT0 268 aa17.27■□□□□ 0.36
PDGFRB-201ENST00000261799 GNL2Q13823 731 aaKnown RBP17.27■□□□□ 0.35
PDGFRB-201ENST00000261799 PSME1Q06323 249 aa17.27■□□□□ 0.35
PDGFRB-201ENST00000261799 KLHL34Q8N239 644 aa17.26■□□□□ 0.35
PDGFRB-201ENST00000261799 FRAT2O75474 233 aaPredicted RBP17.26■□□□□ 0.35
PDGFRB-201ENST00000261799 GPATCH3Q96I76 525 aa17.26■□□□□ 0.35
PDGFRB-201ENST00000261799 GOLGA6L6A8MZA4 724 aa17.25■□□□□ 0.35
PDGFRB-201ENST00000261799 SF3B2Q13435 895 aaKnown RBP17.24■□□□□ 0.35
PDGFRB-201ENST00000261799 COG3Q96JB2 828 aa17.23■□□□□ 0.35
PDGFRB-201ENST00000261799 TRAK1Q9UPV9 953 aa17.22■□□□□ 0.35
PDGFRB-201ENST00000261799 KIAA1211Q6ZU35 1233 aa17.22■□□□□ 0.35
PDGFRB-201ENST00000261799 CCDC144AA2RUR9 1427 aa17.21■□□□□ 0.35
PDGFRB-201ENST00000261799 HSPA5P11021 654 aaKnown RBP17.2■□□□□ 0.34
PDGFRB-201ENST00000261799 TTC5Q8N0Z6 440 aa17.2■□□□□ 0.34
PDGFRB-201ENST00000261799 MIER1Q8N108 512 aa17.2■□□□□ 0.34
PDGFRB-201ENST00000261799 HSP90AB1P08238 724 aaKnown RBP17.2■□□□□ 0.34
PDGFRB-201ENST00000261799 NCBP3Q53F19 620 aaKnown RBP17.2■□□□□ 0.34
PDGFRB-201ENST00000261799 EVC2Q86UK5 1308 aa17.19■□□□□ 0.34
PDGFRB-201ENST00000261799 MRC2Q9UBG0 1479 aa17.18■□□□□ 0.34
PDGFRB-201ENST00000261799 GOLGA6L4A6NEF3 574 aa17.18■□□□□ 0.34
PDGFRB-201ENST00000261799 SYTL4Q96C24 671 aaPredicted RBP17.18■□□□□ 0.34
PDGFRB-201ENST00000261799 RALBP1Q15311 655 aa17.18■□□□□ 0.34
PDGFRB-201ENST00000261799 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.17■□□□□ 0.34
PDGFRB-201ENST00000261799 KANK4Q5T7N3 995 aaPredicted RBP17.17■□□□□ 0.34
PDGFRB-201ENST00000261799 FGD5Q6ZNL6 1462 aa17.16■□□□□ 0.34
PDGFRB-201ENST00000261799 PTMAP06454 111 aaKnown RBP17.16■□□□□ 0.34
PDGFRB-201ENST00000261799 RGS3P49796 1198 aa17.16■□□□□ 0.34
PDGFRB-201ENST00000261799 TRIM34Q9BYJ4 488 aa17.16■□□□□ 0.34
PDGFRB-201ENST00000261799 PRDM2Q13029 1718 aa17.16■□□□□ 0.34
PDGFRB-201ENST00000261799 WASHC2AQ641Q2 1341 aa17.15■□□□□ 0.34
PDGFRB-201ENST00000261799 APBB1O00213 710 aa17.15■□□□□ 0.34
PDGFRB-201ENST00000261799 NOL10Q9BSC4 688 aaKnown RBP17.14■□□□□ 0.33
PDGFRB-201ENST00000261799 ITPRIPQ8IWB1 547 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms