RNA–Protein interactions for RNA: ENST00000258607.9

CKAP2-201, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CKAP2, Length 3,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-201ENST00000258607 CARMIL2Q6F5E8 1435 aa12.64□□□□□ -0.39
CKAP2-201ENST00000258607 TARBP1Q13395 1621 aaKnown RBP12.64□□□□□ -0.39
CKAP2-201ENST00000258607 CUL7Q14999 1698 aa12.63□□□□□ -0.39
CKAP2-201ENST00000258607 NEFLP07196 543 aa12.63□□□□□ -0.39
CKAP2-201ENST00000258607 CARD11Q9BXL7 1154 aa12.63□□□□□ -0.39
CKAP2-201ENST00000258607 ARHGEF11O15085 1522 aa12.63□□□□□ -0.39
CKAP2-201ENST00000258607 ABCA5Q8WWZ7 1642 aa12.62□□□□□ -0.39
CKAP2-201ENST00000258607 CTTNBP2Q8WZ74 1663 aa12.62□□□□□ -0.39
CKAP2-201ENST00000258607 EFCAB5A4FU69 1503 aa12.61□□□□□ -0.39
CKAP2-201ENST00000258607 EIF4G3O43432 1585 aaKnown RBP12.61□□□□□ -0.39
CKAP2-201ENST00000258607 CYB5RLQ6IPT4 315 aa12.6□□□□□ -0.39
CKAP2-201ENST00000258607 GGT6Q6P531 493 aa12.6□□□□□ -0.39
CKAP2-201ENST00000258607 SUPT16HQ9Y5B9 1047 aaKnown RBP12.6□□□□□ -0.39
CKAP2-201ENST00000258607 WASHC2AQ641Q2 1341 aa12.59□□□□□ -0.39
CKAP2-201ENST00000258607 NUP153P49790 1475 aaKnown RBP12.59□□□□□ -0.39
CKAP2-201ENST00000258607 KIAA0586Q9BVV6 1533 aa12.59□□□□□ -0.39
CKAP2-201ENST00000258607 SAFB2Q14151 953 aaKnown RBP eCLIP12.57□□□□□ -0.4
CKAP2-201ENST00000258607 MLECQ14165 292 aa12.57□□□□□ -0.4
CKAP2-201ENST00000258607 KDM6BO15054 1643 aa12.57□□□□□ -0.4
CKAP2-201ENST00000258607 DISP1Q96F81 1524 aa12.57□□□□□ -0.4
CKAP2-201ENST00000258607 UACAQ9BZF9 1416 aa12.57□□□□□ -0.4
CKAP2-201ENST00000258607 CC2D1BQ5T0F9 858 aaKnown RBP12.56□□□□□ -0.4
CKAP2-201ENST00000258607 HFM1A2PYH4 1435 aa12.56□□□□□ -0.4
CKAP2-201ENST00000258607 PTPN23Q9H3S7 1636 aa12.56□□□□□ -0.4
CKAP2-201ENST00000258607 ADAMTS12P58397 1594 aa12.56□□□□□ -0.4
CKAP2-201ENST00000258607 PBRM1Q86U86 1689 aa12.56□□□□□ -0.4
CKAP2-201ENST00000258607 ST20-MTHFSA0A0A6YYL1 179 aa12.56□□□□□ -0.4
CKAP2-201ENST00000258607 NPM1P06748 294 aaKnown RBP eCLIP12.55□□□□□ -0.4
CKAP2-201ENST00000258607 NBPF1Q3BBV0 1214 aa12.55□□□□□ -0.4
CKAP2-201ENST00000258607 ABCC5O15440 1437 aa12.55□□□□□ -0.4
CKAP2-201ENST00000258607 KIF3BO15066 747 aa12.54□□□□□ -0.4
CKAP2-201ENST00000258607 SYNJ2O15056 1496 aa12.54□□□□□ -0.4
CKAP2-201ENST00000258607 SUPT6HQ7KZ85 1726 aaKnown RBP12.53□□□□□ -0.4
CKAP2-201ENST00000258607 TNNT2P45379 298 aaPredicted RBP12.53□□□□□ -0.4
CKAP2-201ENST00000258607 DAPK1P53355 1430 aa12.53□□□□□ -0.4
CKAP2-201ENST00000258607 LRRIQ1Q96JM4 1722 aa12.52□□□□□ -0.41
CKAP2-201ENST00000258607 EHBP1L1Q8N3D4 1523 aa12.52□□□□□ -0.41
CKAP2-201ENST00000258607 KIF15Q9NS87 1388 aa12.51□□□□□ -0.41
CKAP2-201ENST00000258607 CEP170Q5SW79 1584 aa12.51□□□□□ -0.41
CKAP2-201ENST00000258607 ANKRD30AQ9BXX3 1397 aa12.51□□□□□ -0.41
CKAP2-201ENST00000258607 TROQ12816 1431 aaPredicted RBP12.5□□□□□ -0.41
CKAP2-201ENST00000258607 HECW1Q76N89 1606 aa12.5□□□□□ -0.41
CKAP2-201ENST00000258607 CFAP43Q8NDM7 1665 aa12.49□□□□□ -0.41
CKAP2-201ENST00000258607 ANKRD50Q9ULJ7 1429 aa12.49□□□□□ -0.41
CKAP2-201ENST00000258607 PLEKHG5O94827 1062 aa12.49□□□□□ -0.41
CKAP2-201ENST00000258607 TMC1Q8TDI8 760 aa12.49□□□□□ -0.41
CKAP2-201ENST00000258607 ATP10BO94823 1461 aa12.48□□□□□ -0.41
CKAP2-201ENST00000258607 ERCC6L2Q5T890 1561 aa12.48□□□□□ -0.41
CKAP2-201ENST00000258607 KIF14Q15058 1648 aa12.48□□□□□ -0.41
CKAP2-201ENST00000258607 UGGT2Q9NYU1 1516 aa12.48□□□□□ -0.41
CKAP2-201ENST00000258607 KIF7Q2M1P5 1343 aa12.47□□□□□ -0.41
CKAP2-201ENST00000258607 SAMD9Q5K651 1589 aa12.47□□□□□ -0.41
CKAP2-201ENST00000258607 CAMSAP2Q08AD1 1489 aa12.47□□□□□ -0.41
CKAP2-201ENST00000258607 RAPGEF3O95398 923 aa12.47□□□□□ -0.41
CKAP2-201ENST00000258607 WDR62O43379 1518 aa12.47□□□□□ -0.41
CKAP2-201ENST00000258607 KIAA0556O60303 1618 aa12.46□□□□□ -0.41
CKAP2-201ENST00000258607 GPATCH8Q9UKJ3 1502 aaKnown RBP12.46□□□□□ -0.42
CKAP2-201ENST00000258607 EFCAB2Q5VUJ9 269 aa12.45□□□□□ -0.42
CKAP2-201ENST00000258607 BCL11AQ9H165 835 aa12.45□□□□□ -0.42
CKAP2-201ENST00000258607 MAP3K1Q13233 1512 aa12.44□□□□□ -0.42
CKAP2-201ENST00000258607 SPAG9O60271 1321 aaKnown RBP12.44□□□□□ -0.42
CKAP2-201ENST00000258607 C9orf84Q5VXU9 1444 aa12.44□□□□□ -0.42
CKAP2-201ENST00000258607 MAGI1Q96QZ7 1491 aaPredicted RBP12.43□□□□□ -0.42
CKAP2-201ENST00000258607 ARHGAP5Q13017 1502 aa12.43□□□□□ -0.42
CKAP2-201ENST00000258607 NCOA1Q15788 1441 aa12.43□□□□□ -0.42
CKAP2-201ENST00000258607 B4GALNT3Q6L9W6 998 aa12.43□□□□□ -0.42
CKAP2-201ENST00000258607 STK26Q9P289 416 aa12.43□□□□□ -0.42
CKAP2-201ENST00000258607 ROCK2O75116 1388 aaKnown RBP12.42□□□□□ -0.42
CKAP2-201ENST00000258607 RAPGEF6Q8TEU7 1601 aa12.42□□□□□ -0.42
CKAP2-201ENST00000258607 USP47Q96K76 1375 aa12.42□□□□□ -0.42
CKAP2-201ENST00000258607 PRKRIP1Q9H875 184 aaPredicted RBP12.41□□□□□ -0.42
CKAP2-201ENST00000258607 ANKRD30BQ9BXX2 1392 aa12.4□□□□□ -0.42
CKAP2-201ENST00000258607 OSCARQ8IYS5 282 aa12.4□□□□□ -0.42
CKAP2-201ENST00000258607 NEUROD2Q15784 382 aa12.39□□□□□ -0.43
CKAP2-201ENST00000258607 TMEM132EQ6IEE7 984 aa12.39□□□□□ -0.43
CKAP2-201ENST00000258607 TIMELESSQ9UNS1 1208 aa12.39□□□□□ -0.43
CKAP2-201ENST00000258607 SCAPERQ9BY12 1400 aa12.38□□□□□ -0.43
CKAP2-201ENST00000258607 MIA2Q96PC5 1412 aa12.37□□□□□ -0.43
CKAP2-201ENST00000258607 DENND4BO75064 1496 aaPredicted RBP12.37□□□□□ -0.43
CKAP2-201ENST00000258607 PELP1Q8IZL8 1130 aaKnown RBP12.37□□□□□ -0.43
CKAP2-201ENST00000258607 CCDC7Q96M83 1385 aa12.37□□□□□ -0.43
CKAP2-201ENST00000258607 STAG3Q9UJ98 1225 aa12.36□□□□□ -0.43
CKAP2-201ENST00000258607 TRAK1Q9UPV9 953 aa12.36□□□□□ -0.43
CKAP2-201ENST00000258607 PLEKHH2Q8IVE3 1493 aa12.36□□□□□ -0.43
CKAP2-201ENST00000258607 NUTM2FA1L443 756 aa12.34□□□□□ -0.43
CKAP2-201ENST00000258607 CCDC144AA2RUR9 1427 aa12.34□□□□□ -0.43
CKAP2-201ENST00000258607 CFAP70Q5T0N1 1121 aa12.34□□□□□ -0.43
CKAP2-201ENST00000258607 AKNAQ7Z591 1439 aa12.34□□□□□ -0.43
CKAP2-201ENST00000258607 CFAP65Q6ZU64 1925 aaKnown RBP12.34□□□□□ -0.43
CKAP2-201ENST00000258607 NUP160Q12769 1436 aa12.33□□□□□ -0.43
CKAP2-201ENST00000258607 PANK3Q9H999 370 aa12.33□□□□□ -0.44
CKAP2-201ENST00000258607 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.33□□□□□ -0.44
CKAP2-201ENST00000258607 CCDC146Q8IYE0 955 aa12.32□□□□□ -0.44
CKAP2-201ENST00000258607 ARID4BQ4LE39 1312 aaPredicted RBP12.31□□□□□ -0.44
CKAP2-201ENST00000258607 SYCP2Q9BX26 1530 aa12.31□□□□□ -0.44
CKAP2-201ENST00000258607 KIAA1107Q9UPP5 1409 aa12.31□□□□□ -0.44
CKAP2-201ENST00000258607 TRAPPC8Q9Y2L5 1435 aa12.31□□□□□ -0.44
CKAP2-201ENST00000258607 PLIN1O60240 522 aa12.3□□□□□ -0.44
CKAP2-201ENST00000258607 WASHC2CQ9Y4E1 1318 aa12.29□□□□□ -0.44
CKAP2-201ENST00000258607 PPM1GO15355 546 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms