RNA–Protein interactions for RNA: ENST00000251775.8

SNX4-201, Transcript of sorting nexin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX4, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-201ENST00000251775 TRIM52Q96A61 297 aa26.54■■□□□ 1.84
SNX4-201ENST00000251775 SYNJ2O15056 1496 aa26.54■■□□□ 1.84
SNX4-201ENST00000251775 CHMP7Q8WUX9 453 aaPredicted RBP26.53■■□□□ 1.84
SNX4-201ENST00000251775 DAPK1P53355 1430 aa26.51■■□□□ 1.83
SNX4-201ENST00000251775 DNMT1P26358 1616 aaKnown RBP26.5■■□□□ 1.83
SNX4-201ENST00000251775 ZNF644Q9H582 1327 aaPredicted RBP26.49■■□□□ 1.83
SNX4-201ENST00000251775 ANP32CO43423 234 aa26.48■■□□□ 1.83
SNX4-201ENST00000251775 ABCC5O15440 1437 aa26.48■■□□□ 1.83
SNX4-201ENST00000251775 MPHOSPH9Q99550 1183 aa26.47■■□□□ 1.83
SNX4-201ENST00000251775 CDK11AQ9UQ88 783 aaPredicted RBP26.47■■□□□ 1.83
SNX4-201ENST00000251775 PLB1Q6P1J6 1458 aa26.46■■□□□ 1.83
SNX4-201ENST00000251775 FBLN2P98095 1184 aa26.46■■□□□ 1.83
SNX4-201ENST00000251775 ROCK1Q13464 1354 aa26.45■■□□□ 1.83
SNX4-201ENST00000251775 PRG4Q92954 1404 aaPredicted RBP26.45■■□□□ 1.83
SNX4-201ENST00000251775 TROQ12816 1431 aaPredicted RBP26.43■■□□□ 1.82
SNX4-201ENST00000251775 NUP160Q12769 1436 aa26.42■■□□□ 1.82
SNX4-201ENST00000251775 MSH5O43196 834 aa26.39■■□□□ 1.81
SNX4-201ENST00000251775 JPH4Q96JJ6 628 aa26.39■■□□□ 1.81
SNX4-201ENST00000251775 FOXD1Q16676 465 aa26.38■■□□□ 1.81
SNX4-201ENST00000251775 CARMIL2Q6F5E8 1435 aa26.37■■□□□ 1.81
SNX4-201ENST00000251775 KIF14Q15058 1648 aa26.37■■□□□ 1.81
SNX4-201ENST00000251775 ITSN2Q9NZM3 1697 aa26.36■■□□□ 1.81
SNX4-201ENST00000251775 ADCY10Q96PN6 1610 aa26.36■■□□□ 1.81
SNX4-201ENST00000251775 CAMSAP2Q08AD1 1489 aa26.35■■□□□ 1.81
SNX4-201ENST00000251775 GPATCH8Q9UKJ3 1502 aaKnown RBP26.34■■□□□ 1.81
SNX4-201ENST00000251775 CFDP1Q9UEE9 299 aaPredicted RBP26.32■■□□□ 1.8
SNX4-201ENST00000251775 ANKRD30BQ9BXX2 1392 aa26.3■■□□□ 1.8
SNX4-201ENST00000251775 L3MBTL2Q969R5 705 aa26.3■■□□□ 1.8
SNX4-201ENST00000251775 HSPA5P11021 654 aaKnown RBP26.28■■□□□ 1.8
SNX4-201ENST00000251775 ADGBQ8N7X0 1667 aa26.28■■□□□ 1.8
SNX4-201ENST00000251775 ABCA8O94911 1581 aa26.27■■□□□ 1.8
SNX4-201ENST00000251775 RPRD2Q5VT52 1461 aaKnown RBP26.26■■□□□ 1.79
SNX4-201ENST00000251775 FANCIQ9NVI1 1328 aa26.26■■□□□ 1.79
SNX4-201ENST00000251775 CROCC2H7BZ55 1655 aa26.25■■□□□ 1.79
SNX4-201ENST00000251775 ZNF777Q9ULD5 760 aaPredicted RBP26.24■■□□□ 1.79
SNX4-201ENST00000251775 NCOA1Q15788 1441 aa26.24■■□□□ 1.79
SNX4-201ENST00000251775 SLC4A1APQ9BWU0 796 aaKnown RBP26.24■■□□□ 1.79
SNX4-201ENST00000251775 WASHC2AQ641Q2 1341 aa26.21■■□□□ 1.79
SNX4-201ENST00000251775 PZPP20742 1482 aa26.21■■□□□ 1.79
SNX4-201ENST00000251775 CDC42BPAQ5VT25 1732 aa26.21■■□□□ 1.79
SNX4-201ENST00000251775 TEX14Q8IWB6 1497 aa26.21■■□□□ 1.79
SNX4-201ENST00000251775 ATP10BO94823 1461 aa26.2■■□□□ 1.79
SNX4-201ENST00000251775 EIF4G2P78344 907 aaKnown RBP eCLIP26.2■■□□□ 1.79
SNX4-201ENST00000251775 ADGRL2O95490 1459 aa26.2■■□□□ 1.78
SNX4-201ENST00000251775 HNRNPUQ00839 825 aaKnown RBP eCLIP26.18■■□□□ 1.78
SNX4-201ENST00000251775 PLEKHD1A6NEE1 506 aa26.17■■□□□ 1.78
SNX4-201ENST00000251775 ABCC10Q5T3U5 1492 aa26.17■■□□□ 1.78
SNX4-201ENST00000251775 NBPF8Q3BBV2 869 aa26.16■■□□□ 1.78
SNX4-201ENST00000251775 IRX6P78412 446 aaPredicted RBP26.15■■□□□ 1.78
SNX4-201ENST00000251775 ANKRD30AQ9BXX3 1397 aa26.12■■□□□ 1.77
SNX4-201ENST00000251775 C11orf95C9JLR9 678 aaPredicted RBP26.09■■□□□ 1.77
SNX4-201ENST00000251775 KIAA1107Q9UPP5 1409 aa26.07■■□□□ 1.76
SNX4-201ENST00000251775 ANKRD50Q9ULJ7 1429 aa26.06■■□□□ 1.76
SNX4-201ENST00000251775 PTPRGP23470 1445 aa26.05■■□□□ 1.76
SNX4-201ENST00000251775 CNTLNQ9NXG0 1405 aa26.04■■□□□ 1.76
SNX4-201ENST00000251775 SHANK2Q9UPX8 1470 aa26.04■■□□□ 1.76
SNX4-201ENST00000251775 CHD1O14646 1710 aa26.04■■□□□ 1.76
SNX4-201ENST00000251775 ERICH6BQ5W0A0 696 aa26.04■■□□□ 1.76
SNX4-201ENST00000251775 ERICH6Q7L0X2 663 aa26.04■■□□□ 1.76
SNX4-201ENST00000251775 CCDC7Q96M83 1385 aa26.03■■□□□ 1.76
SNX4-201ENST00000251775 C9orf84Q5VXU9 1444 aa26.03■■□□□ 1.76
SNX4-201ENST00000251775 PKD2Q13563 968 aa26.02■■□□□ 1.76
SNX4-201ENST00000251775 SPATA31E1Q6ZUB1 1445 aa26.02■■□□□ 1.76
SNX4-201ENST00000251775 MBD5Q9P267 1494 aa26■■□□□ 1.75
SNX4-201ENST00000251775 PPP4R2Q9NY27 417 aa25.98■■□□□ 1.75
SNX4-201ENST00000251775 POLR1AO95602 1720 aaPredicted RBP25.98■■□□□ 1.75
SNX4-201ENST00000251775 HNRNPMP52272 730 aaKnown RBP eCLIP25.95■■□□□ 1.75
SNX4-201ENST00000251775 CDC42BPBQ9Y5S2 1711 aa25.95■■□□□ 1.75
SNX4-201ENST00000251775 ARHGEF5Q12774 1597 aa25.95■■□□□ 1.75
SNX4-201ENST00000251775 TSPY4P0CV99 314 aa25.94■■□□□ 1.74
SNX4-201ENST00000251775 TSPY10P0CW01 314 aa25.94■■□□□ 1.74
SNX4-201ENST00000251775 NUP155O75694 1391 aa25.94■■□□□ 1.74
SNX4-201ENST00000251775 SAMD9LQ8IVG5 1584 aa25.92■■□□□ 1.74
SNX4-201ENST00000251775 PREX2Q70Z35 1606 aa25.92■■□□□ 1.74
SNX4-201ENST00000251775 KIF7Q2M1P5 1343 aa25.92■■□□□ 1.74
SNX4-201ENST00000251775 CCDC184Q52MB2 194 aa25.91■■□□□ 1.74
SNX4-201ENST00000251775 SHROOM2Q13796 1616 aa25.91■■□□□ 1.74
SNX4-201ENST00000251775 KDM5DQ9BY66 1539 aa25.91■■□□□ 1.74
SNX4-201ENST00000251775 KIF15Q9NS87 1388 aa25.9■■□□□ 1.74
SNX4-201ENST00000251775 PRKRIP1Q9H875 184 aaPredicted RBP25.87■■□□□ 1.73
SNX4-201ENST00000251775 ZNF326Q5BKZ1 582 aaKnown RBP25.86■■□□□ 1.73
SNX4-201ENST00000251775 MYT1LQ9UL68 1186 aa25.86■■□□□ 1.73
SNX4-201ENST00000251775 CCDC141Q6ZP82 1450 aa25.85■■□□□ 1.73
SNX4-201ENST00000251775 BCORL1Q5H9F3 1711 aa25.84■■□□□ 1.73
SNX4-201ENST00000251775 ERCC6L2Q5T890 1561 aa25.84■■□□□ 1.73
SNX4-201ENST00000251775 B4GALNT3Q6L9W6 998 aa25.83■■□□□ 1.73
SNX4-201ENST00000251775 TTC37Q6PGP7 1564 aa25.83■■□□□ 1.72
SNX4-201ENST00000251775 USP47Q96K76 1375 aa25.82■■□□□ 1.72
SNX4-201ENST00000251775 KDM5CP41229 1560 aa25.81■■□□□ 1.72
SNX4-201ENST00000251775 UHRF1BP1Q6BDS2 1440 aa25.8■■□□□ 1.72
SNX4-201ENST00000251775 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.79■■□□□ 1.72
SNX4-201ENST00000251775 ZBED9Q6R2W3 1325 aa25.79■■□□□ 1.72
SNX4-201ENST00000251775 SYCP2Q9BX26 1530 aa25.78■■□□□ 1.72
SNX4-201ENST00000251775 ARHGEF12Q9NZN5 1544 aa25.77■■□□□ 1.72
SNX4-201ENST00000251775 RSPH4AQ5TD94 716 aa25.77■■□□□ 1.72
SNX4-201ENST00000251775 FAM9BQ8IZU0 186 aa25.77■■□□□ 1.72
SNX4-201ENST00000251775 ABCC2Q92887 1545 aa25.77■■□□□ 1.72
SNX4-201ENST00000251775 RALGAPBQ86X10 1494 aa25.76■■□□□ 1.71
SNX4-201ENST00000251775 ARHGAP5Q13017 1502 aa25.76■■□□□ 1.71
SNX4-201ENST00000251775 DEKP35659 375 aaKnown RBP25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms