RNA–Protein interactions for RNA: ENST00000249007.4

RFPL3-201, Transcript of ret finger protein like 3, humanhuman

TSL 1 (best) BASIC

Gene RFPL3, Length 1,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFPL3-201ENST00000249007 SAMD9Q5K651 1589 aa20.59■□□□□ 0.89
RFPL3-201ENST00000249007 PLEKHD1A6NEE1 506 aa20.59■□□□□ 0.89
RFPL3-201ENST00000249007 ARHGEF12Q9NZN5 1544 aa20.59■□□□□ 0.89
RFPL3-201ENST00000249007 HECW1Q76N89 1606 aa20.58■□□□□ 0.89
RFPL3-201ENST00000249007 CEBPAP49715 358 aaPredicted RBP20.58■□□□□ 0.89
RFPL3-201ENST00000249007 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.57■□□□□ 0.88
RFPL3-201ENST00000249007 UHRF1BP1Q6BDS2 1440 aa20.57■□□□□ 0.88
RFPL3-201ENST00000249007 SETD1BQ9UPS6 1966 aaKnown RBP20.53■□□□□ 0.88
RFPL3-201ENST00000249007 PTPRTO14522 1441 aa20.53■□□□□ 0.88
RFPL3-201ENST00000249007 ATP10AO60312 1499 aa20.53■□□□□ 0.88
RFPL3-201ENST00000249007 C9orf84Q5VXU9 1444 aa20.52■□□□□ 0.88
RFPL3-201ENST00000249007 SCAPERQ9BY12 1400 aa20.51■□□□□ 0.87
RFPL3-201ENST00000249007 LTBP4Q8N2S1 1624 aa20.49■□□□□ 0.87
RFPL3-201ENST00000249007 IQSEC2Q5JU85 1478 aa20.49■□□□□ 0.87
RFPL3-201ENST00000249007 PLCH2O75038 1416 aa20.43■□□□□ 0.86
RFPL3-201ENST00000249007 RANGAP1P46060 587 aaPredicted RBP20.42■□□□□ 0.86
RFPL3-201ENST00000249007 NCOA1Q15788 1441 aa20.37■□□□□ 0.85
RFPL3-201ENST00000249007 C3P01024 1663 aa20.37■□□□□ 0.85
RFPL3-201ENST00000249007 EFCAB2Q5VUJ9 269 aa20.37■□□□□ 0.85
RFPL3-201ENST00000249007 ZNF518AQ6AHZ1 1483 aa20.36■□□□□ 0.85
RFPL3-201ENST00000249007 UBAP1LF5GYI3 381 aa20.35■□□□□ 0.85
RFPL3-201ENST00000249007 CDK13Q14004 1512 aaKnown RBP20.34■□□□□ 0.85
RFPL3-201ENST00000249007 TRAPPC8Q9Y2L5 1435 aa20.34■□□□□ 0.85
RFPL3-201ENST00000249007 ESF1Q9H501 851 aaKnown RBP20.33■□□□□ 0.85
RFPL3-201ENST00000249007 MYT1LQ9UL68 1186 aa20.33■□□□□ 0.85
RFPL3-201ENST00000249007 MYO5CQ9NQX4 1742 aa20.32■□□□□ 0.84
RFPL3-201ENST00000249007 KDM5CP41229 1560 aa20.31■□□□□ 0.84
RFPL3-201ENST00000249007 AFAP1Q8N556 730 aa20.31■□□□□ 0.84
RFPL3-201ENST00000249007 CSRNP3Q8WYN3 585 aa20.31■□□□□ 0.84
RFPL3-201ENST00000249007 DIP2CQ9Y2E4 1556 aa20.31■□□□□ 0.84
RFPL3-201ENST00000249007 REREQ9P2R6 1566 aa20.3■□□□□ 0.84
RFPL3-201ENST00000249007 ZNF335Q9H4Z2 1342 aaPredicted RBP20.28■□□□□ 0.84
RFPL3-201ENST00000249007 CAMSAP1Q5T5Y3 1602 aa20.27■□□□□ 0.84
RFPL3-201ENST00000249007 AGLP35573 1532 aa20.25■□□□□ 0.83
RFPL3-201ENST00000249007 ABCA6Q8N139 1617 aa20.25■□□□□ 0.83
RFPL3-201ENST00000249007 ARHGAP5Q13017 1502 aa20.24■□□□□ 0.83
RFPL3-201ENST00000249007 CNTLNQ9NXG0 1405 aa20.24■□□□□ 0.83
RFPL3-201ENST00000249007 CHIC1Q5VXU3 224 aa20.23■□□□□ 0.83
RFPL3-201ENST00000249007 MED1Q15648 1581 aaPredicted RBP20.22■□□□□ 0.83
RFPL3-201ENST00000249007 NCKAP5LQ9HCH0 1330 aa20.22■□□□□ 0.83
RFPL3-201ENST00000249007 MLH3Q9UHC1 1453 aa20.22■□□□□ 0.83
RFPL3-201ENST00000249007 KIF14Q15058 1648 aa20.2■□□□□ 0.82
RFPL3-201ENST00000249007 NPATQ14207 1427 aa20.2■□□□□ 0.82
RFPL3-201ENST00000249007 CDK11AQ9UQ88 783 aaPredicted RBP20.19■□□□□ 0.82
RFPL3-201ENST00000249007 ATP1B4Q9UN42 357 aaPredicted RBP20.18■□□□□ 0.82
RFPL3-201ENST00000249007 SCAF1Q9H7N4 1312 aaKnown RBP20.17■□□□□ 0.82
RFPL3-201ENST00000249007 HSPA1LP34931 641 aa20.17■□□□□ 0.82
RFPL3-201ENST00000249007 PKD2Q13563 968 aa20.15■□□□□ 0.82
RFPL3-201ENST00000249007 PLA2R1Q13018 1463 aa20.14■□□□□ 0.82
RFPL3-201ENST00000249007 MROH2AA6NES4 1674 aa20.13■□□□□ 0.81
RFPL3-201ENST00000249007 TROQ12816 1431 aaPredicted RBP20.13■□□□□ 0.81
RFPL3-201ENST00000249007 PIP4K2BP78356 416 aa20.12■□□□□ 0.81
RFPL3-201ENST00000249007 ZMYM3Q14202 1370 aa20.12■□□□□ 0.81
RFPL3-201ENST00000249007 CLIP1P30622 1438 aa20.12■□□□□ 0.81
RFPL3-201ENST00000249007 TCOF1Q13428 1488 aaKnown RBP20.11■□□□□ 0.81
RFPL3-201ENST00000249007 PHF23Q9BUL5 403 aaPredicted RBP20.11■□□□□ 0.81
RFPL3-201ENST00000249007 FMN1Q68DA7 1419 aa20.1■□□□□ 0.81
RFPL3-201ENST00000249007 ABCC1P33527 1531 aa20.1■□□□□ 0.81
RFPL3-201ENST00000249007 PPP6R1Q9UPN7 881 aa20.1■□□□□ 0.81
RFPL3-201ENST00000249007 ZNF142P52746 1687 aaPredicted RBP20.09■□□□□ 0.81
RFPL3-201ENST00000249007 CDC42BPBQ9Y5S2 1711 aa20.09■□□□□ 0.81
RFPL3-201ENST00000249007 KIDINS220Q9ULH0 1771 aa20.09■□□□□ 0.81
RFPL3-201ENST00000249007 MYO3AQ8NEV4 1616 aa20.09■□□□□ 0.81
RFPL3-201ENST00000249007 SUPT6HQ7KZ85 1726 aaKnown RBP20.09■□□□□ 0.81
RFPL3-201ENST00000249007 EEA1Q15075 1411 aa20.09■□□□□ 0.81
RFPL3-201ENST00000249007 TOM1O60784 492 aa20.08■□□□□ 0.81
RFPL3-201ENST00000249007 CEP170BQ9Y4F5 1589 aaPredicted RBP20.08■□□□□ 0.8
RFPL3-201ENST00000249007 ITSN2Q9NZM3 1697 aa20.06■□□□□ 0.8
RFPL3-201ENST00000249007 PREX2Q70Z35 1606 aa20.05■□□□□ 0.8
RFPL3-201ENST00000249007 PTPRKQ15262 1439 aa20.02■□□□□ 0.79
RFPL3-201ENST00000249007 CLTCQ00610 1675 aaKnown RBP20.02■□□□□ 0.79
RFPL3-201ENST00000249007 CPS1P31327 1500 aa20.01■□□□□ 0.79
RFPL3-201ENST00000249007 SAMD9LQ8IVG5 1584 aa19.99■□□□□ 0.79
RFPL3-201ENST00000249007 SHANK2Q9UPX8 1470 aa19.97■□□□□ 0.79
RFPL3-201ENST00000249007 ARHGAP35Q9NRY4 1499 aa19.96■□□□□ 0.79
RFPL3-201ENST00000249007 SPAG9O60271 1321 aaKnown RBP19.95■□□□□ 0.78
RFPL3-201ENST00000249007 LRRIQ1Q96JM4 1722 aa19.95■□□□□ 0.78
RFPL3-201ENST00000249007 A2ML1A8K2U0 1454 aa19.94■□□□□ 0.78
RFPL3-201ENST00000249007 DNMT1P26358 1616 aaKnown RBP19.93■□□□□ 0.78
RFPL3-201ENST00000249007 GGT6Q6P531 493 aa19.92■□□□□ 0.78
RFPL3-201ENST00000249007 PLXNC1O60486 1568 aa19.92■□□□□ 0.78
RFPL3-201ENST00000249007 POLR1AO95602 1720 aaPredicted RBP19.92■□□□□ 0.78
RFPL3-201ENST00000249007 CDC42BPAQ5VT25 1732 aa19.92■□□□□ 0.78
RFPL3-201ENST00000249007 ZNF777Q9ULD5 760 aaPredicted RBP19.92■□□□□ 0.78
RFPL3-201ENST00000249007 SYCP2Q9BX26 1530 aa19.91■□□□□ 0.78
RFPL3-201ENST00000249007 NEURL4Q96JN8 1562 aa19.91■□□□□ 0.78
RFPL3-201ENST00000249007 ATP7AQ04656 1500 aa19.9■□□□□ 0.78
RFPL3-201ENST00000249007 UBTFP17480 764 aaKnown RBP19.9■□□□□ 0.78
RFPL3-201ENST00000249007 A2MP01023 1474 aa19.9■□□□□ 0.78
RFPL3-201ENST00000249007 ALKQ9UM73 1620 aa19.89■□□□□ 0.77
RFPL3-201ENST00000249007 SENP3Q9H4L4 574 aaPredicted RBP19.88■□□□□ 0.77
RFPL3-201ENST00000249007 EHMT2Q96KQ7 1210 aa19.87■□□□□ 0.77
RFPL3-201ENST00000249007 HNRNPMP52272 730 aaKnown RBP eCLIP19.86■□□□□ 0.77
RFPL3-201ENST00000249007 INO80Q9ULG1 1556 aaPredicted RBP19.86■□□□□ 0.77
RFPL3-201ENST00000249007 CCDC18Q5T9S5 1454 aa19.85■□□□□ 0.77
RFPL3-201ENST00000249007 VWDEQ8N2E2 1590 aa19.85■□□□□ 0.77
RFPL3-201ENST00000249007 ANKLE2Q86XL3 938 aa19.83■□□□□ 0.76
RFPL3-201ENST00000249007 RGS17Q9UGC6 210 aaPredicted RBP19.82■□□□□ 0.76
RFPL3-201ENST00000249007 TNRQ92752 1358 aa19.81■□□□□ 0.76
RFPL3-201ENST00000249007 KIAA1107Q9UPP5 1409 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms