RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 TRIM52Q96A61 297 aa11.84□□□□□ -0.51
VAMP3-201ENST00000054666 CFDP1Q9UEE9 299 aaPredicted RBP11.84□□□□□ -0.51
VAMP3-201ENST00000054666 ADGBQ8N7X0 1667 aa11.83□□□□□ -0.52
VAMP3-201ENST00000054666 GPATCH8Q9UKJ3 1502 aaKnown RBP11.83□□□□□ -0.52
VAMP3-201ENST00000054666 SCAF1Q9H7N4 1312 aaKnown RBP11.83□□□□□ -0.52
VAMP3-201ENST00000054666 PLEKHD1A6NEE1 506 aa11.82□□□□□ -0.52
VAMP3-201ENST00000054666 YTHDC1Q96MU7 727 aaKnown RBP11.82□□□□□ -0.52
VAMP3-201ENST00000054666 KDM6BO15054 1643 aa11.82□□□□□ -0.52
VAMP3-201ENST00000054666 PTPRGP23470 1445 aa11.82□□□□□ -0.52
VAMP3-201ENST00000054666 PPP1R15AO75807 674 aaPredicted RBP11.82□□□□□ -0.52
VAMP3-201ENST00000054666 CROCC2H7BZ55 1655 aa11.81□□□□□ -0.52
VAMP3-201ENST00000054666 ATP10BO94823 1461 aa11.81□□□□□ -0.52
VAMP3-201ENST00000054666 ZNF644Q9H582 1327 aaPredicted RBP11.8□□□□□ -0.52
VAMP3-201ENST00000054666 SHROOM2Q13796 1616 aa11.8□□□□□ -0.52
VAMP3-201ENST00000054666 CDC42BPAQ5VT25 1732 aa11.79□□□□□ -0.52
VAMP3-201ENST00000054666 ZNF777Q9ULD5 760 aaPredicted RBP11.78□□□□□ -0.52
VAMP3-201ENST00000054666 ADGRL2O95490 1459 aa11.77□□□□□ -0.52
VAMP3-201ENST00000054666 ABCC10Q5T3U5 1492 aa11.77□□□□□ -0.52
VAMP3-201ENST00000054666 MPHOSPH9Q99550 1183 aa11.77□□□□□ -0.53
VAMP3-201ENST00000054666 DENND4BO75064 1496 aaPredicted RBP11.76□□□□□ -0.53
VAMP3-201ENST00000054666 SHANK2Q9UPX8 1470 aa11.76□□□□□ -0.53
VAMP3-201ENST00000054666 ANKRD30AQ9BXX3 1397 aa11.75□□□□□ -0.53
VAMP3-201ENST00000054666 NCOA1Q15788 1441 aa11.75□□□□□ -0.53
VAMP3-201ENST00000054666 KDM5BQ9UGL1 1544 aa11.73□□□□□ -0.53
VAMP3-201ENST00000054666 PREX2Q70Z35 1606 aa11.73□□□□□ -0.53
VAMP3-201ENST00000054666 ABCC2Q92887 1545 aa11.72□□□□□ -0.53
VAMP3-201ENST00000054666 SLC4A1APQ9BWU0 796 aaKnown RBP11.72□□□□□ -0.53
VAMP3-201ENST00000054666 C9orf84Q5VXU9 1444 aa11.72□□□□□ -0.53
VAMP3-201ENST00000054666 ARHGEF5Q12774 1597 aa11.71□□□□□ -0.53
VAMP3-201ENST00000054666 GTF3C3Q9Y5Q9 886 aa11.71□□□□□ -0.54
VAMP3-201ENST00000054666 CLASP1Q7Z460 1538 aa11.7□□□□□ -0.54
VAMP3-201ENST00000054666 ANKRD50Q9ULJ7 1429 aa11.7□□□□□ -0.54
VAMP3-201ENST00000054666 RPRD2Q5VT52 1461 aaKnown RBP11.7□□□□□ -0.54
VAMP3-201ENST00000054666 ANKRD30BQ9BXX2 1392 aa11.7□□□□□ -0.54
VAMP3-201ENST00000054666 PZPP20742 1482 aa11.69□□□□□ -0.54
VAMP3-201ENST00000054666 DDX10Q13206 875 aaKnown RBP11.69□□□□□ -0.54
VAMP3-201ENST00000054666 ERCC6L2Q5T890 1561 aa11.69□□□□□ -0.54
VAMP3-201ENST00000054666 TSPY4P0CV99 314 aa11.68□□□□□ -0.54
VAMP3-201ENST00000054666 TSPY10P0CW01 314 aa11.68□□□□□ -0.54
VAMP3-201ENST00000054666 CCDC141Q6ZP82 1450 aa11.68□□□□□ -0.54
VAMP3-201ENST00000054666 FOXD1Q16676 465 aa11.68□□□□□ -0.54
VAMP3-201ENST00000054666 CDC42BPBQ9Y5S2 1711 aa11.68□□□□□ -0.54
VAMP3-201ENST00000054666 SAMD9LQ8IVG5 1584 aa11.68□□□□□ -0.54
VAMP3-201ENST00000054666 TTC37Q6PGP7 1564 aa11.67□□□□□ -0.54
VAMP3-201ENST00000054666 ARHGAP5Q13017 1502 aa11.67□□□□□ -0.54
VAMP3-201ENST00000054666 MYO5CQ9NQX4 1742 aa11.66□□□□□ -0.54
VAMP3-201ENST00000054666 KIAA1107Q9UPP5 1409 aa11.66□□□□□ -0.54
VAMP3-201ENST00000054666 HIRIP3Q9BW71 556 aaPredicted RBP11.66□□□□□ -0.54
VAMP3-201ENST00000054666 TEX14Q8IWB6 1497 aa11.66□□□□□ -0.54
VAMP3-201ENST00000054666 KIF15Q9NS87 1388 aa11.65□□□□□ -0.54
VAMP3-201ENST00000054666 RSPH4AQ5TD94 716 aa11.65□□□□□ -0.54
VAMP3-201ENST00000054666 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.65□□□□□ -0.542e-6■■□□□ 11.5
VAMP3-201ENST00000054666 MBD5Q9P267 1494 aa11.65□□□□□ -0.55
VAMP3-201ENST00000054666 L3MBTL2Q969R5 705 aa11.64□□□□□ -0.55
VAMP3-201ENST00000054666 KDM5DQ9BY66 1539 aa11.64□□□□□ -0.55
VAMP3-201ENST00000054666 UHRF1BP1LA0JNW5 1464 aa11.64□□□□□ -0.55
VAMP3-201ENST00000054666 PLEKHH2Q8IVE3 1493 aa11.64□□□□□ -0.55
VAMP3-201ENST00000054666 SYCP2Q9BX26 1530 aa11.64□□□□□ -0.55
VAMP3-201ENST00000054666 ZCCHC11Q5TAX3 1644 aaKnown RBP11.64□□□□□ -0.55
VAMP3-201ENST00000054666 ANP32CO43423 234 aa11.63□□□□□ -0.55
VAMP3-201ENST00000054666 HNRNPMP52272 730 aaKnown RBP eCLIP11.63□□□□□ -0.55
VAMP3-201ENST00000054666 EIF4G2P78344 907 aaKnown RBP eCLIP11.63□□□□□ -0.55
VAMP3-201ENST00000054666 MAST1Q9Y2H9 1570 aa11.62□□□□□ -0.55
VAMP3-201ENST00000054666 NUP155O75694 1391 aa11.62□□□□□ -0.55
VAMP3-201ENST00000054666 PKD2Q13563 968 aa11.61□□□□□ -0.55
VAMP3-201ENST00000054666 HSPA5P11021 654 aaKnown RBP11.6□□□□□ -0.55
VAMP3-201ENST00000054666 PLXNC1O60486 1568 aa11.58□□□□□ -0.56
VAMP3-201ENST00000054666 CCER2I3L3R5 266 aa11.58□□□□□ -0.56
VAMP3-201ENST00000054666 KCNH8Q96L42 1107 aa11.57□□□□□ -0.56
VAMP3-201ENST00000054666 PLCH2O75038 1416 aa11.56□□□□□ -0.56
VAMP3-201ENST00000054666 FAM135AQ9P2D6 1515 aa11.56□□□□□ -0.56
VAMP3-201ENST00000054666 UNC13BO14795 1591 aa11.56□□□□□ -0.56
VAMP3-201ENST00000054666 ARHGEF12Q9NZN5 1544 aa11.55□□□□□ -0.56
VAMP3-201ENST00000054666 ABCC1P33527 1531 aa11.55□□□□□ -0.56
VAMP3-201ENST00000054666 WASHC2AQ641Q2 1341 aa11.54□□□□□ -0.56
VAMP3-201ENST00000054666 NBPF8Q3BBV2 869 aa11.54□□□□□ -0.56
VAMP3-201ENST00000054666 EFCAB2Q5VUJ9 269 aa11.54□□□□□ -0.56
VAMP3-201ENST00000054666 POLR1AO95602 1720 aaPredicted RBP11.54□□□□□ -0.56
VAMP3-201ENST00000054666 ARAP3Q8WWN8 1544 aa11.54□□□□□ -0.56
VAMP3-201ENST00000054666 DUOX2Q9NRD8 1548 aa11.54□□□□□ -0.56
VAMP3-201ENST00000054666 CNTLNQ9NXG0 1405 aa11.53□□□□□ -0.56
VAMP3-201ENST00000054666 WDR7Q9Y4E6 1490 aa11.52□□□□□ -0.57
VAMP3-201ENST00000054666 ERBINQ96RT1 1412 aa11.52□□□□□ -0.57
VAMP3-201ENST00000054666 CCDC7Q96M83 1385 aa11.51□□□□□ -0.57
VAMP3-201ENST00000054666 IQGAP3Q86VI3 1631 aa11.51□□□□□ -0.57
VAMP3-201ENST00000054666 ZNF326Q5BKZ1 582 aaKnown RBP11.51□□□□□ -0.57
VAMP3-201ENST00000054666 UHRF1BP1Q6BDS2 1440 aa11.51□□□□□ -0.57
VAMP3-201ENST00000054666 RALGAPBQ86X10 1494 aa11.5□□□□□ -0.57
VAMP3-201ENST00000054666 SPATA31E1Q6ZUB1 1445 aa11.5□□□□□ -0.57
VAMP3-201ENST00000054666 CCDC144AA2RUR9 1427 aa11.5□□□□□ -0.57
VAMP3-201ENST00000054666 USP47Q96K76 1375 aa11.49□□□□□ -0.57
VAMP3-201ENST00000054666 MAGI2Q86UL8 1455 aa11.48□□□□□ -0.57
VAMP3-201ENST00000054666 KDM5CP41229 1560 aa11.47□□□□□ -0.57
VAMP3-201ENST00000054666 ABCA9Q8IUA7 1624 aa11.47□□□□□ -0.57
VAMP3-201ENST00000054666 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.47□□□□□ -0.57
VAMP3-201ENST00000054666 TRAPPC8Q9Y2L5 1435 aa11.46□□□□□ -0.57
VAMP3-201ENST00000054666 ZFYVE16Q7Z3T8 1539 aa11.46□□□□□ -0.57
VAMP3-201ENST00000054666 RTEL1-TNFRSF6BF6WH68 1400 aa11.46□□□□□ -0.58
VAMP3-201ENST00000054666 SPAG9O60271 1321 aaKnown RBP11.45□□□□□ -0.58
VAMP3-201ENST00000054666 KIF7Q2M1P5 1343 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms