RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Gtf2e1Q9D0D5 440 aa13.36□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Lemd3Q9WU40 921 aa13.36□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Ppm1gQ61074 542 aa13.36□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Trim26Q99PN3 545 aa13.36□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Ifit1bl1D3Z6F0 470 aa13.35□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Plppr3Q7TPB0 716 aa13.35□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Rwdd1Q9CQK7 243 aa13.35□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Ncoa2Q61026 1462 aa13.34□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Stard8Q8K031 1019 aa13.34□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Iqcf3Q9D498 203 aa13.34□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Neurod2Q62414 383 aa13.33□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Mak16Q8BGS0 296 aaKnown RBP13.33□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Top2bQ64511 1612 aa13.33□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Ccdc27Q3V036 639 aa13.32□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Tcerg1Q8CGF7 1100 aaKnown RBP13.32□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Vps8Q0P5W1 1427 aa13.32□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 WrnO09053 1401 aa13.32□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Usp47Q8BY87 1376 aa13.32□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Smg6P61406 1418 aaKnown RBP13.31□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Map7O88735 730 aa13.31□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Htatsf1Q8BGC0 757 aa13.31□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Naip1Q9QWK5 1403 aa13.29□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Grin2bQ01097 1482 aa13.28□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 SafbD3YXK2 937 aaKnown RBP13.28□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Rsph4aQ8BYM7 716 aa13.28□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Apbb1Q9QXJ1 710 aa13.28□□□□□ -0.28
Ccdc40-201ENSMUST00000035935 Sart1Q9Z315 806 aaKnown RBP13.27□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Ncapd3Q6ZQK0 1506 aa13.26□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Srcin1Q9QWI6 1250 aa13.26□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Arhgef5E9Q7D5 1581 aa13.26□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Duox2A2AQ99 1517 aa13.26□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Cc2d2bA0A286YDU8 1405 aa13.25□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 BicraF8VPZ9 1578 aa13.25□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Mroh2bQ7M6Y6 1581 aa13.24□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Frmpd1A2AKB4 1549 aa13.24□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Arap1Q4LDD4 1452 aa13.23□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Speer4f1Q9D5Q6 258 aa13.23□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 PogzQ8BZH4 1409 aaKnown RBP13.23□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Cnga1P29974 684 aa13.22□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Arid3cA6PWV5 409 aa13.22□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 DekQ7TNV0 380 aaKnown RBP13.22□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Kif3bQ61771 747 aa13.22□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Supt16hQ920B9 1047 aa13.22□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Ift140E9PY46 1464 aa13.21□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 Jph4Q80WT0 628 aa13.21□□□□□ -0.29
Ccdc40-201ENSMUST00000035935 KnstrnQ9D9Z1 312 aaKnown RBP13.2□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Golga2Q921M4 999 aa13.2□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Tiam1Q60610 1591 aa13.19□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Gm6268A2A3U9 297 aa13.19□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 EspnQ9ET47 871 aa13.19□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 AqrQ8CFQ3 1481 aaKnown RBP13.19□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 HnrnpuQ8VEK3 800 aaKnown RBP13.18□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Dcaf11Q91VU6 549 aa13.18□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Rad54l2Q99NG0 1466 aa13.18□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Dapk1Q80YE7 1442 aa13.18□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Spag9Q58A65 1321 aaKnown RBP13.17□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Ppp1r18Q8BQ30 594 aa13.17□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Chmp5Q9D7S9 219 aa13.17□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Dbr1Q923B1 550 aa13.16□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Trim44Q9QXA7 346 aa13.16□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Tdrd9Q14BI7 1383 aa13.15□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 CenpjQ569L8 1344 aa13.15□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Gm7298A0A0N4SVU1 1476 aa13.15□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 B4galnt3Q6L8S8 986 aa13.15□□□□□ -0.3
Ccdc40-201ENSMUST00000035935 Slc4a1apE9PX68 744 aa13.14□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Wdr62Q3U3T8 1523 aa13.14□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 U2af1Q9D883 239 aaKnown RBP13.14□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Nsd2Q8BVE8 1365 aa13.14□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Camsap1A2AHC3 1581 aa13.14□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Prdm16A2A935 1275 aa13.13□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Lamc3Q9R0B6 1581 aa13.13□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 PtprkP35822 1457 aa13.13□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Pank3Q8R2W9 370 aa13.13□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Ipo9Q91YE6 1041 aa13.13□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Soga1E1U8D0 1418 aa13.13□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Urb2E9Q7L1 1524 aaKnown RBP13.12□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Stk26Q99JT2 416 aa13.12□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Slc4a3P16283 1227 aa13.11□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Plcb2A3KGF7 1181 aa13.1□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Rock1P70335 1354 aa13.1□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 AampJ3QN89 436 aa13.09□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Mrc2Q64449 1479 aa13.09□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 NgefQ8CHT1 710 aa13.09□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Dnai1Q8C0M8 701 aa13.09□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Ccar1Q8CH18 1146 aaKnown RBP13.09□□□□□ -0.31
Ccdc40-201ENSMUST00000035935 Fam184bQ0KK56 942 aa13.08□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Fan1Q69ZT1 1020 aa13.08□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Rtf1A2AQ19 715 aaKnown RBP13.08□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Armcx1Q9CX83 456 aa13.08□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Il16O54824 1322 aa13.08□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 EprsQ8CGC7 1512 aaKnown RBP13.07□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Psme1P97371 249 aa13.07□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 CrbnQ8C7D2 445 aa13.07□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Fam163aQ8CAA5 168 aa13.06□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 PtmaP26350 111 aa13.06□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 PtmsQ9D0J8 101 aaKnown RBP13.06□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Irx6Q9ER75 438 aa13.06□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Ipo8Q7TMY7 1010 aa13.06□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 MccE9PWI3 1003 aa13.05□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Arhgap31A6X8Z5 1425 aa13.05□□□□□ -0.32
Retrieved 100 of 22,080 RNA–protein pairs in 29.9 ms