RNA–Protein interactions for RNA: ENSMUST00000028728.5

Ubr1-201, Transcript of E3 ubiquitin-protein ligase UBR1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubr1, Length 7,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr1-201ENSMUST00000028728 Becn1O88597 448 aa12.84□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Sin3aQ60520 1274 aaKnown RBP12.83□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Rundc1Q0VDN7 615 aa12.82□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Ifnlr1Q8CGK5 535 aa12.82□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Rock2P70336 1388 aa12.81□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Gm20521D3Z5F7 333 aa12.81□□□□□ -0.36
Ubr1-201ENSMUST00000028728 AampJ3QN89 436 aa12.81□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Ush1cQ9ES64 910 aa12.8□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Speer4f1Q9D5Q6 258 aa12.8□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Kdm2aP59997 1161 aa12.8□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Map7d2A2AG50 781 aa12.8□□□□□ -0.36
Ubr1-201ENSMUST00000028728 ChgaP26339 463 aaKnown RBP12.8□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Iqcf3Q9D498 203 aa12.8□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Armcx1Q9CX83 456 aa12.79□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Tmf1B9EKI3 1091 aa12.79□□□□□ -0.36
Ubr1-201ENSMUST00000028728 RdxP26043 583 aaKnown RBP12.78□□□□□ -0.36
Ubr1-201ENSMUST00000028728 Mphosph9A6H5Y1 991 aa12.77□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Exosc9Q9JHI7 438 aaKnown RBP12.76□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Hsp90b1P08113 802 aaKnown RBP12.76□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Gm6268A2A3U9 297 aa12.76□□□□□ -0.37
Ubr1-201ENSMUST00000028728 PnnO35691 725 aaKnown RBP12.76□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Taok2Q6ZQ29 1240 aa12.76□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Pde3bQ61409 1100 aa12.75□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Rsph3aQ3UFY4 516 aa12.75□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Glipr1l2Q9CQ35 332 aa12.75□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Znf710Q3U288 666 aa12.74□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Cspp1B2RX88 1205 aa12.73□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Crybg2B7ZCC2 1516 aa12.73□□□□□ -0.37
Ubr1-201ENSMUST00000028728 SlkO54988 1233 aa12.73□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Atp6v1dP57746 247 aa12.72□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Rrp9Q91WM3 475 aaKnown RBP12.72□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Mfap1aC0HKD8 439 aaKnown RBP12.72□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Mfap1bC0HKD9 439 aaKnown RBP12.72□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Znf316Q6PGE4 1016 aa12.72□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Golga2Q921M4 999 aa12.71□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Kdm5dQ62240 1548 aa12.71□□□□□ -0.37
Ubr1-201ENSMUST00000028728 Kiaa0754Q69ZZ9 979 aa12.71□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Smarce1O54941 411 aaKnown RBP12.7□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Sart3Q9JLI8 962 aaKnown RBP12.7□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Ylpm1Q9R0I7 1386 aaKnown RBP12.7□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Trim30aP15533 496 aa12.69□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Cald1E9QA15 768 aaKnown RBP12.69□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Kif27Q7M6Z4 1394 aa12.69□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Map4P27546 1125 aaKnown RBP12.69□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Rrp7aQ9D1C9 280 aaKnown RBP12.68□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Ankrd36D3Z4K0 1415 aa12.68□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Prkrip1Q9CWV6 186 aaKnown RBP12.68□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Ipo4Q8VI75 1082 aa12.68□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Pes1Q9EQ61 584 aaKnown RBP12.68□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Fbxo2Q80UW2 297 aa12.67□□□□□ -0.38
Ubr1-201ENSMUST00000028728 UacaQ8CGB3 1411 aa12.67□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Plcd4Q8K3R3 807 aa12.67□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Znf326O88291 580 aa12.67□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Pcmtd1P59913 357 aa12.67□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Aebp1Q640N1 1128 aa12.67□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Cgnl1Q6AW69 1298 aa12.67□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Ccar1Q8CH18 1146 aaKnown RBP12.65□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Tpm2P58774 284 aa12.65□□□□□ -0.38
Ubr1-201ENSMUST00000028728 Stag3O70576 1240 aa12.65□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Washc2Q6PGL7 1334 aa12.64□□□□□ -0.39
Ubr1-201ENSMUST00000028728 R3hcc1Q8BSI6 488 aa12.64□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Gtf2a1Q99PM3 378 aa12.64□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Rapgef2Q8CHG7 1496 aa12.64□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Isy1Q69ZQ2 285 aaKnown RBP12.64□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Kif16bB1AVY7 1312 aa12.63□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Gtf2e1Q9D0D5 440 aa12.63□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Cluap1Q8R3P7 413 aa12.62□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Stard8Q8K031 1019 aa12.62□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Rabep1O35551 862 aa12.62□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Rock1P70335 1354 aa12.62□□□□□ -0.39
Ubr1-201ENSMUST00000028728 SetQ9EQU5 289 aaKnown RBP12.61□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Trak1Q6PD31 939 aa12.61□□□□□ -0.39
Ubr1-201ENSMUST00000028728 CrbnQ8C7D2 445 aa12.61□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Cabp1Q9JLK7 227 aa12.61□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Ercc6F8VPZ5 1481 aa12.61□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Phf14Q9D4H9 881 aa12.61□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Ak7Q9D2H2 614 aa12.6□□□□□ -0.39
Ubr1-201ENSMUST00000028728 U2af1Q9D883 239 aaKnown RBP12.6□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Casq1O09165 405 aa12.59□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Atl3Q91YH5 541 aa12.59□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Ifit1bl1D3Z6F0 470 aa12.59□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Ralbp1Q62172 648 aa12.59□□□□□ -0.39
Ubr1-201ENSMUST00000028728 Arhgap27A2AB59 869 aa12.58□□□□□ -0.4
Ubr1-201ENSMUST00000028728 St18Q80TY4 1045 aa12.57□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Srcin1Q9QWI6 1250 aa12.57□□□□□ -0.4
Ubr1-201ENSMUST00000028728 GorabQ8BRM2 368 aa12.57□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Eif2s2Q99L45 331 aaKnown RBP12.57□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Usp47Q8BY87 1376 aa12.57□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Ccdc173A0JLY1 547 aa12.56□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Dcaf11Q91VU6 549 aa12.56□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Kif3aP28741 701 aa12.56□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Ksr2Q3UVC0 959 aa12.56□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Tmco5bQ80X59 307 aa12.56□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Rtn4Q99P72 1162 aaKnown RBP12.56□□□□□ -0.4
Ubr1-201ENSMUST00000028728 CftrP26361 1476 aa12.55□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Plekhh2Q8C115 1491 aa12.55□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Smarca2Q6DIC0 1577 aa12.55□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Carmil1Q6EDY6 1374 aa12.55□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Trim58Q5NCC9 485 aa12.55□□□□□ -0.4
Ubr1-201ENSMUST00000028728 CgnP59242 1191 aa12.55□□□□□ -0.4
Retrieved 100 of 22,080 RNA–protein pairs in 59.8 ms