RNA–Protein interactions for RNA: YKR094C

RPL40B, Transcript of Ubiquitin-ribosomal 60S subunit protein L40B fusion protein, yeastyeast

Gene RPL40B, Length 387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPL40BYKR094C CAF40P53829 373 aa1.87□□□□□ -2.11
RPL40BYKR094C SUB1P54000 292 aaKnown RBP1.87□□□□□ -2.11
RPL40BYKR094C MSC1Q03104 513 aa1.87□□□□□ -2.11
RPL40BYKR094C VMS1Q04311 632 aaKnown RBP1.87□□□□□ -2.11
RPL40BYKR094C PHO92Q06390 306 aa1.87□□□□□ -2.11
RPL40BYKR094C NCE102Q12207 173 aaRIP-Chip data1.87□□□□□ -2.11not detected
RPL40BYKR094C RAD52P06778 471 aaKnown RBP1.86□□□□□ -2.11
RPL40BYKR094C PHO81P17442 1178 aa1.86□□□□□ -2.11
RPL40BYKR094C ALY1P36117 915 aa1.86□□□□□ -2.11
RPL40BYKR094C KTR3P38130 404 aaPredicted RBP1.86□□□□□ -2.11
RPL40BYKR094C HRI1Q05905 244 aaKnown RBP1.86□□□□□ -2.11
RPL40BYKR094C ETT1Q08421 412 aaKnown RBP1.86□□□□□ -2.11
RPL40BYKR094C SUC2P00724 532 aa1.85□□□□□ -2.11
RPL40BYKR094C RPB2P08518 1224 aaKnown RBP1.85□□□□□ -2.11
RPL40BYKR094C EXO70P19658 623 aa1.85□□□□□ -2.11
RPL40BYKR094C ADH7P25377 361 aa1.85□□□□□ -2.11
RPL40BYKR094C DPB3P27344 201 aa1.85□□□□□ -2.11
RPL40BYKR094C UTR4P32626 227 aa1.85□□□□□ -2.11
RPL40BYKR094C SDH3P33421 198 aa1.85□□□□□ -2.11
RPL40BYKR094C YBL055CP34220 418 aaPredicted RBP1.85□□□□□ -2.11
RPL40BYKR094C TEF4P36008 412 aaKnown RBP1.85□□□□□ -2.11
RPL40BYKR094C NAT2P37293 288 aa1.85□□□□□ -2.11
RPL40BYKR094C YDL057WQ07379 328 aa1.85□□□□□ -2.11
RPL40BYKR094C YOR365CQ08844 703 aa1.85□□□□□ -2.11
RPL40BYKR094C ATP4P05626 244 aa1.84□□□□□ -2.11
RPL40BYKR094C KGD1P20967 1014 aaKnown RBP1.84□□□□□ -2.11
RPL40BYKR094C VMA16P23968 213 aa1.84□□□□□ -2.11
RPL40BYKR094C NUP133P36161 1157 aa1.84□□□□□ -2.11
RPL40BYKR094C RIC1P40395 1056 aa1.84□□□□□ -2.11
RPL40BYKR094C PAN6P40459 309 aa1.84□□□□□ -2.11
RPL40BYKR094C GCD10P41814 478 aa1.84□□□□□ -2.11
RPL40BYKR094C WWM1P43582 211 aaKnown RBP1.84□□□□□ -2.11
RPL40BYKR094C PTR3P43606 678 aa1.84□□□□□ -2.11
RPL40BYKR094C RRT5P43607 289 aa1.84□□□□□ -2.11
RPL40BYKR094C AVT4P50944 713 aa1.84□□□□□ -2.11
RPL40BYKR094C YGR126WP53274 230 aa1.84□□□□□ -2.11
RPL40BYKR094C HSP26P15992 214 aaKnown RBP RIP-Chip data1.83□□□□□ -2.12not detected
RPL40BYKR094C MSM1P22438 575 aa1.83□□□□□ -2.12
RPL40BYKR094C MRP20P32387 263 aa1.83□□□□□ -2.12
RPL40BYKR094C PTH2P34222 208 aa1.83□□□□□ -2.12
RPL40BYKR094C RPL32P38061 130 aaKnown RBP1.83□□□□□ -2.12
RPL40BYKR094C GOR1P53839 350 aa1.83□□□□□ -2.12
RPL40BYKR094C BI3Q9ZZW7 517 aa1.83□□□□□ -2.12
RPL40BYKR094C BOS1P25385 244 aa1.82□□□□□ -2.12
RPL40BYKR094C PUP3P25451 205 aaKnown RBP1.82□□□□□ -2.12
RPL40BYKR094C CNS1P33313 385 aa1.82□□□□□ -2.12
RPL40BYKR094C YHR210CP38893 341 aa1.82□□□□□ -2.12
RPL40BYKR094C ART5P53244 586 aaKnown RBP1.82□□□□□ -2.12
RPL40BYKR094C PAP2P53632 584 aaKnown RBP1.82□□□□□ -2.12
RPL40BYKR094C VPS72Q03388 795 aa1.82□□□□□ -2.12
RPL40BYKR094C ATG16Q03818 150 aa1.82□□□□□ -2.12
RPL40BYKR094C RCO1Q04779 684 aa1.82□□□□□ -2.12
RPL40BYKR094C YLR108CQ12259 485 aa1.82□□□□□ -2.12
RPL40BYKR094C PFK2P16862 959 aaKnown RBP RIP-Chip data1.81□□□□□ -2.12not detected
RPL40BYKR094C DAL2P25335 343 aa1.81□□□□□ -2.12
RPL40BYKR094C IMG1P25626 169 aa1.81□□□□□ -2.12
RPL40BYKR094C PWP2P25635 923 aaKnown RBP1.81□□□□□ -2.12
RPL40BYKR094C MRS6P32864 603 aaKnown RBP1.81□□□□□ -2.12
RPL40BYKR094C VPS24P36095 224 aaKnown RBP1.81□□□□□ -2.12
RPL40BYKR094C ICS2P38284 255 aa1.81□□□□□ -2.12
RPL40BYKR094C ACA1P39970 489 aa1.81□□□□□ -2.12
RPL40BYKR094C GPI1P53306 609 aa1.81□□□□□ -2.12
RPL40BYKR094C RSN1Q03516 953 aa1.81□□□□□ -2.12
RPL40BYKR094C CFT2Q12102 859 aaPredicted RBP1.81□□□□□ -2.12
RPL40BYKR094C YBL111CQ3E7Y5 667 aa1.81□□□□□ -2.12
RPL40BYKR094C APA1P16550 321 aaKnown RBP1.8□□□□□ -2.12
RPL40BYKR094C SUI2P20459 304 aaKnown RBP1.8□□□□□ -2.12
RPL40BYKR094C TRX2P22803 104 aaKnown RBP1.8□□□□□ -2.12
RPL40BYKR094C NAB3P38996 802 aaKnown RBP RIP-Chip data1.8□□□□□ -2.12not detected
RPL40BYKR094C BSC5P53755 489 aa1.8□□□□□ -2.12
RPL40BYKR094C EFM6P53970 246 aa1.8□□□□□ -2.12
RPL40BYKR094C UBX4P54730 416 aa1.8□□□□□ -2.12
RPL40BYKR094C BLS1Q06071 122 aa1.8□□□□□ -2.12
RPL40BYKR094C TRM8Q12009 286 aa1.8□□□□□ -2.12
RPL40BYKR094C RKM5Q12367 367 aa1.8□□□□□ -2.12
RPL40BYKR094C PEP4P07267 405 aaKnown RBP1.79□□□□□ -2.12
RPL40BYKR094C NDI1P32340 513 aa1.79□□□□□ -2.12
RPL40BYKR094C YKL097CP34245 136 aa1.79□□□□□ -2.12
RPL40BYKR094C LYS4P49367 693 aaPredicted RBP1.79□□□□□ -2.12
RPL40BYKR094C YGR127WP53275 312 aa1.79□□□□□ -2.12
RPL40BYKR094C IBD2P53892 351 aa1.79□□□□□ -2.12
RPL40BYKR094C RIX7Q07844 837 aaKnown RBP1.79□□□□□ -2.12
RPL40BYKR094C HSH49Q99181 213 aaPredicted RBP1.79□□□□□ -2.12
RPL40BYKR094C GLC7P32598 312 aaKnown RBP1.78□□□□□ -2.12
RPL40BYKR094C FRE2P36033 711 aa1.78□□□□□ -2.12
RPL40BYKR094C FUI1P38196 639 aa1.78□□□□□ -2.12
RPL40BYKR094C MSG5P38590 489 aa1.78□□□□□ -2.12
RPL40BYKR094C UME6P39001 836 aa1.78□□□□□ -2.12
RPL40BYKR094C PRM5P40476 318 aa1.78□□□□□ -2.12
RPL40BYKR094C FAR3P46671 204 aa1.78□□□□□ -2.12
RPL40BYKR094C BNA1P47096 177 aa1.78□□□□□ -2.12
RPL40BYKR094C APT1P49435 187 aaKnown RBP1.78□□□□□ -2.12
RPL40BYKR094C YGR021WP53212 290 aa1.78□□□□□ -2.12
RPL40BYKR094C PEX25Q02969 394 aa1.78□□□□□ -2.12
RPL40BYKR094C RBS1Q05672 457 aaKnown RBP1.78□□□□□ -2.12
RPL40BYKR094C BUD21Q08492 214 aaPredicted RBP1.78□□□□□ -2.12
RPL40BYKR094C CCH1P50077 2039 aa1.78□□□□□ -2.13
RPL40BYKR094C RPS8AP0CX39 200 aaKnown RBP1.77□□□□□ -2.13
RPL40BYKR094C RPS8BP0CX40 200 aaKnown RBP1.77□□□□□ -2.13
RPL40BYKR094C BMT2P38278 337 aa1.77□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 66.7 ms