RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 HVCN1Q96D96 273 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 C8orf37Q96NL8 207 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 UBA5Q9GZZ9 404 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 GJB4Q9NTQ9 266 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 WWC3Q9ULE0 1092 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 NHSL1Q5SYE7 1610 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 JCADQ9P266 1359 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 HSF2BPO75031 334 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 MDH1P40925 334 aaKnown RBP11.29□□□□□ -0.6
VPS39-214ENST00000614932 CCDC102BQ68D86 513 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 SPECC1LQ69YQ0 1117 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 RPGRIP1Q96KN7 1286 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 ATXN10Q9UBB4 475 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 SPATA31A1Q5TZJ5 1347 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 ITGB4P16144 1822 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 DISP2A7MBM2 1401 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 RIC1Q4ADV7 1423 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 PAPPAQ13219 1627 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 A0A0U1RQJ8 604 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 SPDYE5A6NIY4 337 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 SOWAHDA6NJG2 315 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 UPP2O95045 317 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 PDE8BO95263 885 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 PENKP01210 267 aaPredicted RBP11.29□□□□□ -0.6
VPS39-214ENST00000614932 SLC3A2P08195 630 aaKnown RBP11.29□□□□□ -0.6
VPS39-214ENST00000614932 ADD1P35611 737 aaKnown RBP11.29□□□□□ -0.6
VPS39-214ENST00000614932 IL6STP40189 918 aaPredicted RBP11.29□□□□□ -0.6
VPS39-214ENST00000614932 ME1P48163 572 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 INF2Q27J81 1249 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 GALNT17Q6IS24 598 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 ELOA2Q8IYF1 753 aaPredicted RBP11.29□□□□□ -0.6
VPS39-214ENST00000614932 SH2D3CQ8N5H7 860 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 SLC35B4Q969S0 331 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 OPTNQ96CV9 577 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 FAM81BQ96LP2 452 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 ANKRD27Q96NW4 1050 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 DSCC1Q9BVC3 393 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 PREBQ9HCU5 417 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 CCDC87Q9NVE4 849 aa11.29□□□□□ -0.6
VPS39-214ENST00000614932 UTP6Q9NYH9 597 aaKnown RBP11.29□□□□□ -0.6
VPS39-214ENST00000614932 PTPDC1A2A3K4 754 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 CTDNEP1O95476 244 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 VIL1P09327 827 aaKnown RBP11.28□□□□□ -0.6
VPS39-214ENST00000614932 MRPS35P82673 323 aaKnown RBP11.28□□□□□ -0.6
VPS39-214ENST00000614932 LBRQ14739 615 aaKnown RBP11.28□□□□□ -0.6
VPS39-214ENST00000614932 MAATS1Q7Z4T9 603 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 GBP7Q8N8V2 638 aaPredicted RBP11.28□□□□□ -0.6
VPS39-214ENST00000614932 RMDN2Q96LZ7 410 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 MOV10L1Q9BXT6 1211 aaKnown RBP11.28□□□□□ -0.6
VPS39-214ENST00000614932 INTS13Q9NVM9 706 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 GMEB1Q9Y692 573 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 F8VZ95 297 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 PPIP5K2O43314 1243 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 ATP2C2O75185 946 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 CLTAP09496 248 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 VCAM1P19320 739 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 CCND1P24385 295 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 PSMC4P43686 418 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 POLE2P56282 527 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 CUL4BQ13620 913 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 SMYD1Q8NB12 490 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 PANX2Q96RD6 677 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 PLA2G12BQ9BX93 195 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 NAA15Q9BXJ9 866 aaKnown RBP11.28□□□□□ -0.6
VPS39-214ENST00000614932 NDST4Q9H3R1 872 aa11.28□□□□□ -0.6
VPS39-214ENST00000614932 TTF2Q9UNY4 1162 aaKnown RBP11.28□□□□□ -0.6
VPS39-214ENST00000614932 ZNF532Q9HCE3 1301 aa11.27□□□□□ -0.6
VPS39-214ENST00000614932 TMEM221A6NGB7 291 aa11.27□□□□□ -0.6
VPS39-214ENST00000614932 NR1D1P20393 614 aa11.27□□□□□ -0.6
VPS39-214ENST00000614932 BCAMP50895 628 aa11.27□□□□□ -0.6
VPS39-214ENST00000614932 KCTD16Q68DU8 428 aa11.27□□□□□ -0.6
VPS39-214ENST00000614932 RAD9BQ6WBX8 426 aa11.27□□□□□ -0.6
VPS39-214ENST00000614932 RASGRP2Q7LDG7 609 aa11.27□□□□□ -0.6
VPS39-214ENST00000614932 ZNF34Q8IZ26 560 aa11.27□□□□□ -0.6
VPS39-214ENST00000614932 CCDC63Q8NA47 563 aa11.27□□□□□ -0.6
VPS39-214ENST00000614932 DYDC1Q8WWB3 177 aa11.27□□□□□ -0.6
VPS39-214ENST00000614932 BZW2Q9Y6E2 419 aaKnown RBP11.27□□□□□ -0.6
VPS39-214ENST00000614932 ALADP13716 330 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 IMMTQ16891 758 aaKnown RBP11.27□□□□□ -0.61
VPS39-214ENST00000614932 SGSM1Q2NKQ1 1148 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 ANKRD20A2Q5SQ80 823 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 ANKRD20A1Q5TYW2 823 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 ANKRD20A3Q5VUR7 823 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 ATL3Q6DD88 541 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 PPP4R3AQ6IN85 833 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 PNMA8AQ86V59 439 aaPredicted RBP11.27□□□□□ -0.61
VPS39-214ENST00000614932 EXOC8Q8IYI6 725 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 CACNA2D3Q8IZS8 1091 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 CCDC155Q8N6L0 562 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 NSUN7Q8NE18 718 aaKnown RBP11.27□□□□□ -0.61
VPS39-214ENST00000614932 CCT6BQ92526 530 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 APPBP2Q92624 585 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 SEC16BQ96JE7 1060 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 EP400Q96L91 3159 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 MAP3K13O43283 966 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 CAPN15O75808 1086 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 PDIA3P30101 505 aaKnown RBP11.27□□□□□ -0.61
VPS39-214ENST00000614932 CCNG1P51959 295 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 EXOSC10Q01780 885 aaKnown RBP11.27□□□□□ -0.61
VPS39-214ENST00000614932 TAF11Q15544 211 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms