RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	KIAA1468	Q9P260	1216 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	PPP1R9A	Q9ULJ8	1098 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	PCDHA6	Q9UN73	950 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	PCDHA8	Q9Y5H6	950 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	BECN2	A8MW95	431 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	IRF6	O14896	467 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	CELF2	O95319	508 aa	Known RBP	13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	USH1G	Q495M9	461 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	EARS2	Q5JPH6	523 aa	Known RBP	13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	PIK3AP1	Q6ZUJ8	805 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	KRT25	Q7Z3Z0	450 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	TEX2	Q8IWB9	1127 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	OPTN	Q96CV9	577 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	SDF4	Q9BRK5	362 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	PNMA2	Q9UL42	364 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	KCNH4	Q9UQ05	1017 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	CLIC4	Q9Y696	253 aa		13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.27	□□□□□ -0.28
VRK3-223	ENST00000601341	USP17L15	C9J2P7	530 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	USP17L13	C9JLJ4	530 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	USP17L11	C9JVI0	530 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	USP17L18	D6R9N7	530 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	USP17L22	D6RA61	530 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	USP17L17	D6RBQ6	530 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	USP17L19	D6RCP7	530 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	USP17L20	D6RJB6	530 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	ADAMTS3	O15072	1205 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	ITGBL1	O95965	494 aa	Predicted RBP	13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	TOB1	P50616	345 aa	Predicted RBP	13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	USP17L24	Q0WX57	530 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	COG2	Q14746	738 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	CCDC174	Q6PII3	467 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	CATSPERG	Q6ZRH7	1159 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	RASGRP4	Q8TDF6	673 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	SLC38A10	Q9HBR0	1119 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	KCND1	Q9NSA2	647 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	HOXC10	Q9NYD6	342 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	IMPACT	Q9P2X3	320 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	CEP131	Q9UPN4	1083 aa		13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.27	□□□□□ -0.29
VRK3-223	ENST00000601341	PAPPA2	Q9BXP8	1791 aa		13.26	□□□□□ -0.29
VRK3-223	ENST00000601341		A0A0G2JLL6	359 aa	Predicted RBP	13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	FAM205C	A6NFA0	338 aa		13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	ZBED4	O75132	1171 aa		13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	ICAM1	P05362	532 aa		13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	ZRSR1	Q15695	479 aa	Known RBP	13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	GLIPR1L2	Q4G1C9	344 aa		13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	MCTP2	Q6DN12	878 aa		13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	CCDC186	Q7Z3E2	898 aa		13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	PRRT2	Q7Z6L0	340 aa	Predicted RBP	13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	DHX40	Q8IX18	779 aa	Known RBP	13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	DRC7	Q8IY82	874 aa		13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	SPC24	Q8NBT2	197 aa		13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	BIN2	Q9UBW5	565 aa	Predicted RBP	13.26	□□□□□ -0.29
VRK3-223	ENST00000601341	VWA5A	O00534	786 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	BMP15	O95972	392 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	ATP2B1	P20020	1258 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	PTGS1	P23219	599 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	DSG3	P32926	999 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	NDUFA8	P51970	172 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	GSDMD	P57764	484 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	NONO	Q15233	471 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	NOM1	Q5C9Z4	860 aa	Known RBP	13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	PYCARD	Q9ULZ3	195 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	HPSE	Q9Y251	543 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	MRPL11	Q9Y3B7	192 aa	Known RBP	13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	MYPN	Q86TC9	1320 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	OTOF	Q9HC10	1997 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	PHIP	Q8WWQ0	1821 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	IKBKB	O14920	756 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	ZNF202	O95125	648 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	TPM4	P67936	248 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	PTPA	Q15257	358 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	TTC38	Q5R3I4	469 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	JAKMIP3	Q5VZ66	844 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	GADL1	Q6ZQY3	521 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	FASTKD5	Q7L8L6	764 aa	Known RBP	13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	CCPG1	Q9ULG6	757 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	PCDHB6	Q9Y5E3	794 aa		13.25	□□□□□ -0.29
VRK3-223	ENST00000601341	ABCB11	O95342	1321 aa		13.24	□□□□□ -0.29
VRK3-223	ENST00000601341	SMTNL1	A8MU46	457 aa		13.24	□□□□□ -0.29
VRK3-223	ENST00000601341	HOXA7	P31268	230 aa	Predicted RBP	13.24	□□□□□ -0.29
VRK3-223	ENST00000601341	CLK2	P49760	499 aa	Known RBP	13.24	□□□□□ -0.29
VRK3-223	ENST00000601341	SNAPC2	Q13487	334 aa		13.24	□□□□□ -0.29
VRK3-223	ENST00000601341	INF2	Q27J81	1249 aa		13.24	□□□□□ -0.29
VRK3-223	ENST00000601341	ATG4C	Q96DT6	458 aa		13.24	□□□□□ -0.29
VRK3-223	ENST00000601341	ADAMTS5	Q9UNA0	930 aa		13.24	□□□□□ -0.29
VRK3-223	ENST00000601341	ZNF536	O15090	1300 aa		13.24	□□□□□ -0.29
VRK3-223	ENST00000601341		A0A1B0GVL5	298 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	CUTA	O60888	179 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	KCNJ6	P48051	423 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	OAZ1	P54368	228 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	NLRP12	P59046	1061 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	AP3B2	Q13367	1082 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	UBE2S	Q16763	222 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	TREML2	Q5T2D2	321 aa		13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms