RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MCM5P33992 734 aa17.59■□□□□ 0.41
TRIM28-205ENST00000595028 ALDH5A1P51649 535 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-205ENST00000595028 RPS6P62753 249 aaKnown RBP17.59■□□□□ 0.41
TRIM28-205ENST00000595028 PWP2Q15269 919 aaKnown RBP17.59■□□□□ 0.41
TRIM28-205ENST00000595028 CCDC144BQ3MJ40 725 aa17.59■□□□□ 0.41
TRIM28-205ENST00000595028 RNF20Q5VTR2 975 aa17.59■□□□□ 0.41
TRIM28-205ENST00000595028 RNF180Q86T96 592 aa17.59■□□□□ 0.41
TRIM28-205ENST00000595028 MORC4Q8TE76 937 aa17.59■□□□□ 0.41
TRIM28-205ENST00000595028 PHF24Q9UPV7 400 aa17.59■□□□□ 0.41
TRIM28-205ENST00000595028 SH2B2O14492 632 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-205ENST00000595028 CENPBP07199 599 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-205ENST00000595028 COL9A1P20849 921 aa17.58■□□□□ 0.4
TRIM28-205ENST00000595028 ATN1P54259 1190 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-205ENST00000595028 COL9A3Q14050 684 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-205ENST00000595028 SLC35G1Q2M3R5 365 aa17.58■□□□□ 0.4
TRIM28-205ENST00000595028 ZNF697Q5TEC3 545 aa17.58■□□□□ 0.4
TRIM28-205ENST00000595028 CATIPQ7Z7H3 387 aa17.58■□□□□ 0.4
TRIM28-205ENST00000595028 MAFAQ8NHW3 353 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-205ENST00000595028 MTMR8Q96EF0 704 aa17.58■□□□□ 0.4
TRIM28-205ENST00000595028 CDX2Q99626 313 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-205ENST00000595028 VAT1LQ9HCJ6 419 aa17.58■□□□□ 0.4
TRIM28-205ENST00000595028 DDAH1O94760 285 aa17.57■□□□□ 0.4
TRIM28-205ENST00000595028 ADCYAP1R1P41586 468 aa17.57■□□□□ 0.4
TRIM28-205ENST00000595028 SNX17Q15036 470 aa17.57■□□□□ 0.4
TRIM28-205ENST00000595028 ERICH6BQ5W0A0 696 aa17.57■□□□□ 0.4
TRIM28-205ENST00000595028 FBXO11Q86XK2 927 aa17.57■□□□□ 0.4
TRIM28-205ENST00000595028 FBXO16Q8IX29 292 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-205ENST00000595028 ZNF654Q8IZM8 581 aa17.57■□□□□ 0.4
TRIM28-205ENST00000595028 RGS22Q8NE09 1264 aa17.57■□□□□ 0.4
TRIM28-205ENST00000595028 TMEM87BQ96K49 555 aa17.57■□□□□ 0.4
TRIM28-205ENST00000595028 MAF1Q9H063 256 aa17.57■□□□□ 0.4
TRIM28-205ENST00000595028 UPF3AQ9H1J1 476 aaKnown RBP17.57■□□□□ 0.4
TRIM28-205ENST00000595028 VTA1Q9NP79 307 aa17.57■□□□□ 0.4
TRIM28-205ENST00000595028 GPHNQ9NQX3 736 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-205ENST00000595028 MYADML2A6NDP7 307 aa17.56■□□□□ 0.4
TRIM28-205ENST00000595028 ZBTB5O15062 677 aa17.56■□□□□ 0.4
TRIM28-205ENST00000595028 CST5P28325 142 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-205ENST00000595028 RTP1P59025 263 aa17.56■□□□□ 0.4
TRIM28-205ENST00000595028 KLHDC9Q8NEP7 349 aa17.56■□□□□ 0.4
TRIM28-205ENST00000595028 FERMT2Q96AC1 680 aa17.56■□□□□ 0.4
TRIM28-205ENST00000595028 AMNQ9BXJ7 453 aa17.56■□□□□ 0.4
TRIM28-205ENST00000595028 RIOX1Q9H6W3 641 aa17.56■□□□□ 0.4
TRIM28-205ENST00000595028 PPP4R2Q9NY27 417 aa17.56■□□□□ 0.4
TRIM28-205ENST00000595028 MRPL11Q9Y3B7 192 aaKnown RBP17.56■□□□□ 0.4
TRIM28-205ENST00000595028 LTBP2Q14767 1821 aa17.56■□□□□ 0.4
TRIM28-205ENST00000595028 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-205ENST00000595028 A0A1W2PQ45 241 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-205ENST00000595028 A0A1W2PQY0 241 aa17.55■□□□□ 0.4
TRIM28-205ENST00000595028 PPP1R11O60927 126 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-205ENST00000595028 C6orf222P0C671 652 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-205ENST00000595028 EDNRBP24530 442 aa17.55■□□□□ 0.4
TRIM28-205ENST00000595028 GJA9P57773 515 aa17.55■□□□□ 0.4
TRIM28-205ENST00000595028 TNFAIP2Q03169 654 aa17.55■□□□□ 0.4
TRIM28-205ENST00000595028 EEPD1Q7L9B9 569 aa17.55■□□□□ 0.4
TRIM28-205ENST00000595028 DNERQ8NFT8 737 aa17.55■□□□□ 0.4
TRIM28-205ENST00000595028 NUP133Q8WUM0 1156 aa17.55■□□□□ 0.4
TRIM28-205ENST00000595028 MAP3K14Q99558 947 aa17.55■□□□□ 0.4
TRIM28-205ENST00000595028 TSEN34Q9BSV6 310 aaKnown RBP17.55■□□□□ 0.4
TRIM28-205ENST00000595028 MYL10Q9BUA6 226 aa17.55■□□□□ 0.4
TRIM28-205ENST00000595028 SPC25Q9HBM1 224 aa17.55■□□□□ 0.4
TRIM28-205ENST00000595028 MOXD2PA6NHM9 499 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 CYTH3O43739 400 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 LIFRP42702 1097 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 CCSAPQ6IQ19 270 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-205ENST00000595028 TAPT1Q6NXT6 567 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 SLC39A5Q6ZMH5 540 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 NFXL1Q6ZNB6 911 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 HOMER1Q86YM7 354 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 MCF2L2Q86YR7 1114 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 RASEFQ8IZ41 740 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 TMTC2Q8N394 836 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 CTCFLQ8NI51 663 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-205ENST00000595028 SYTL5Q8TDW5 730 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-205ENST00000595028 PIGSQ96S52 555 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 MPHOSPH6Q99547 160 aaKnown RBP17.54■□□□□ 0.4
TRIM28-205ENST00000595028 PDGFCQ9NRA1 345 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 COL20A1Q9P218 1284 aa17.54■□□□□ 0.4
TRIM28-205ENST00000595028 GNEQ9Y223 722 aaKnown RBP17.54■□□□□ 0.4
TRIM28-205ENST00000595028 KIAA1217Q5T5P2 1943 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 CCDC69A6NI79 296 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 OPLAHO14841 1288 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 CTAGE5O15320 804 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 SMPD1P17405 629 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 KIF5BP33176 963 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 ACLYP53396 1101 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 NKX3-2P78367 333 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 IRX5P78411 483 aaPredicted RBP17.53■□□□□ 0.4
TRIM28-205ENST00000595028 GHRHRQ02643 423 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 PDE4DQ08499 809 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 TSGA10IPQ3SY00 556 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 TRIM60Q495X7 471 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 C1orf53Q5VUE5 145 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 NOL8Q76FK4 1167 aaKnown RBP17.53■□□□□ 0.4
TRIM28-205ENST00000595028 TLK2Q86UE8 772 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 TBC1D5Q92609 795 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 SYMPKQ92797 1274 aaKnown RBP17.53■□□□□ 0.4
TRIM28-205ENST00000595028 NEK1Q96PY6 1258 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 LRRC2Q9BYS8 371 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 ATP11BQ9Y2G3 1177 aa17.53■□□□□ 0.4
TRIM28-205ENST00000595028 TRAF1Q13077 416 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms