RNA–Protein interactions for RNA: ENST00000587470.1

VMP1-205, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-205ENST00000587470 PCDHA5Q9Y5H7 936 aa6.89□□□□□ -1.31
VMP1-205ENST00000587470 IRS2Q9Y4H2 1338 aa6.88□□□□□ -1.31
VMP1-205ENST00000587470 C2orf71A6NGG8 1288 aa6.88□□□□□ -1.31
VMP1-205ENST00000587470 B8ZZF3 427 aa6.88□□□□□ -1.31
VMP1-205ENST00000587470 STXBP3O00186 592 aa6.88□□□□□ -1.31
VMP1-205ENST00000587470 BUD31P41223 144 aaPredicted RBP6.88□□□□□ -1.31
VMP1-205ENST00000587470 NCAPHQ15003 741 aa6.88□□□□□ -1.31
VMP1-205ENST00000587470 PLEKHN1Q494U1 663 aaPredicted RBP6.88□□□□□ -1.31
VMP1-205ENST00000587470 IGDCC3Q8IVU1 814 aa6.88□□□□□ -1.31
VMP1-205ENST00000587470 PANK1Q8TE04 598 aa6.88□□□□□ -1.31
VMP1-205ENST00000587470 DACT3Q96B18 629 aaPredicted RBP6.88□□□□□ -1.31
VMP1-205ENST00000587470 APBA2Q99767 749 aa6.88□□□□□ -1.31
VMP1-205ENST00000587470 CAPN10Q9HC96 672 aa6.88□□□□□ -1.31
VMP1-205ENST00000587470 BACE2Q9Y5Z0 518 aa6.88□□□□□ -1.31
VMP1-205ENST00000587470 BAZ1AQ9NRL2 1556 aaPredicted RBP6.87□□□□□ -1.31
VMP1-205ENST00000587470 NAT2P11245 290 aa6.87□□□□□ -1.31
VMP1-205ENST00000587470 ERCC5P28715 1186 aaPredicted RBP6.87□□□□□ -1.31
VMP1-205ENST00000587470 ZNF143P52747 638 aaPredicted RBP6.87□□□□□ -1.31
VMP1-205ENST00000587470 TMEFF1Q8IYR6 380 aa6.87□□□□□ -1.31
VMP1-205ENST00000587470 ZNF513Q8N8E2 541 aaPredicted RBP6.87□□□□□ -1.31
VMP1-205ENST00000587470 EPB41L4AQ9HCS5 686 aaPredicted RBP6.87□□□□□ -1.31
VMP1-205ENST00000587470 AKT3Q9Y243 479 aa6.87□□□□□ -1.31
VMP1-205ENST00000587470 ADAMTS20P59510 1910 aa6.87□□□□□ -1.31
VMP1-205ENST00000587470 TRBV23OR9-2A0A075B6M9 112 aa6.86□□□□□ -1.31
VMP1-205ENST00000587470 BUB1BO60566 1050 aaPredicted RBP6.86□□□□□ -1.31
VMP1-205ENST00000587470 PAMP19021 973 aa6.86□□□□□ -1.31
VMP1-205ENST00000587470 HOXA5P20719 270 aa6.86□□□□□ -1.31
VMP1-205ENST00000587470 CNKSR3Q6P9H4 555 aa6.86□□□□□ -1.31
VMP1-205ENST00000587470 POMZP3Q6PJE2 187 aa6.86□□□□□ -1.31
VMP1-205ENST00000587470 FAM129CQ86XR2 697 aa6.86□□□□□ -1.31
VMP1-205ENST00000587470 CRACR2BQ8N4Y2 399 aaPredicted RBP6.86□□□□□ -1.31
VMP1-205ENST00000587470 APEX2Q9UBZ4 518 aa6.86□□□□□ -1.31
VMP1-205ENST00000587470 EMC9Q9Y3B6 208 aa6.86□□□□□ -1.31
VMP1-205ENST00000587470 F8W031 263 aaPredicted RBP6.85□□□□□ -1.31
VMP1-205ENST00000587470 NOP56O00567 594 aaKnown RBP6.85□□□□□ -1.31
VMP1-205ENST00000587470 PFKLP17858 780 aa6.85□□□□□ -1.31
VMP1-205ENST00000587470 BMP7P18075 431 aa6.85□□□□□ -1.31
VMP1-205ENST00000587470 TACR1P25103 407 aa6.85□□□□□ -1.31
VMP1-205ENST00000587470 AFF3P51826 1226 aaKnown RBP6.85□□□□□ -1.31
VMP1-205ENST00000587470 NCKAP1LP55160 1127 aa6.85□□□□□ -1.31
VMP1-205ENST00000587470 RBM10P98175 930 aaKnown RBP6.85□□□□□ -1.31
VMP1-205ENST00000587470 ZNF200P98182 395 aaPredicted RBP6.85□□□□□ -1.31
VMP1-205ENST00000587470 GNL2Q13823 731 aaKnown RBP6.85□□□□□ -1.31
VMP1-205ENST00000587470 TARBP2Q15633 366 aaKnown RBP6.85□□□□□ -1.31
VMP1-205ENST00000587470 BVESQ8NE79 360 aa6.85□□□□□ -1.31
VMP1-205ENST00000587470 RIMBP3CA6NJZ7 1639 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 RIMBP3BA6NNM3 1639 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 RIMBP3Q9UFD9 1639 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 SMARCA2P51531 1590 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 NPHP3-ACAD11A0A0J9YXS1 232 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 KCNH1O95259 989 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 SSBP05455 408 aaKnown RBP eCLIP6.84□□□□□ -1.31
VMP1-205ENST00000587470 GLI4P10075 376 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 TCF3P15923 654 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 PRR5P85299 388 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 TNNI3KQ59H18 835 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 CABP7Q86V35 215 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 CPNE8Q86YQ8 564 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 LZTR1Q8N653 840 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 MARCH10Q8NA82 808 aaPredicted RBP6.84□□□□□ -1.31
VMP1-205ENST00000587470 PARD6AQ9NPB6 346 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 DBR1Q9UK59 544 aaKnown RBP6.84□□□□□ -1.31
VMP1-205ENST00000587470 MRVI1Q9Y6F6 885 aa6.84□□□□□ -1.31
VMP1-205ENST00000587470 ZC3H12DA2A288 527 aaKnown RBP6.83□□□□□ -1.32
VMP1-205ENST00000587470 SMAD7O15105 426 aaKnown RBP6.83□□□□□ -1.32
VMP1-205ENST00000587470 IGFBP6P24592 240 aaPredicted RBP6.83□□□□□ -1.32
VMP1-205ENST00000587470 CYB5RLQ6IPT4 315 aa6.83□□□□□ -1.32
VMP1-205ENST00000587470 COPS5Q92905 334 aa6.83□□□□□ -1.32
VMP1-205ENST00000587470 ZCCHC4Q9H5U6 513 aa6.83□□□□□ -1.32
VMP1-205ENST00000587470 HCFC2Q9Y5Z7 792 aa6.83□□□□□ -1.32
VMP1-205ENST00000587470 PDS5BQ9NTI5 1447 aa6.83□□□□□ -1.32
VMP1-205ENST00000587470 PPP1R11O60927 126 aaPredicted RBP6.82□□□□□ -1.32
VMP1-205ENST00000587470 NLGN1Q8N2Q7 840 aa6.82□□□□□ -1.32
VMP1-205ENST00000587470 PWWP2AQ96N64 755 aa6.82□□□□□ -1.32
VMP1-205ENST00000587470 KCNC2Q96PR1 638 aa6.82□□□□□ -1.32
VMP1-205ENST00000587470 CYP26B1Q9NR63 512 aa6.82□□□□□ -1.32
VMP1-205ENST00000587470 ACTR10Q9NZ32 417 aa6.82□□□□□ -1.32
VMP1-205ENST00000587470 RWDD3Q9Y3V2 267 aa6.82□□□□□ -1.32
VMP1-205ENST00000587470 LAMC3Q9Y6N6 1575 aa6.82□□□□□ -1.32
VMP1-205ENST00000587470 A0A0G2JLL6 359 aaPredicted RBP6.81□□□□□ -1.32
VMP1-205ENST00000587470 NPHS1O60500 1241 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 TRIM13O60858 407 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 NCAM1P13591 858 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 FBLN1P23142 703 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 CTSWP56202 376 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 SCRN1Q12765 414 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 GTF2IRD2BQ6EKJ0 949 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 C6orf15Q6UXA7 325 aaPredicted RBP6.81□□□□□ -1.32
VMP1-205ENST00000587470 GTF2IRD2Q86UP8 949 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 TRIM59Q8IWR1 403 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 NETO2Q8NC67 525 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 USP33Q8TEY7 942 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 PPP1R14AQ96A00 147 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 MRGPRX3Q96LB0 322 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 MMP19Q99542 508 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 MTA3Q9BTC8 594 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 RNF38Q9H0F5 515 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 GPRC5CQ9NQ84 441 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.81□□□□□ -1.32
VMP1-205ENST00000587470 CLEC1BQ9P126 229 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms