RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 ADD3Q9UEY8 706 aaKnown RBP11.78□□□□□ -0.52
RFFL-208ENST00000581039 CCPG1Q9ULG6 757 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 PRR12Q9ULL5 1215 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 STX8Q9UNK0 236 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 COG5Q9UP83 839 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 MTCH2Q9Y6C9 303 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 TNKSO95271 1327 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 KIF28PB7ZC32 967 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 MYL3P08590 195 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 RFC2P35250 354 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 CPT1AP50416 773 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 PPARAQ07869 468 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 BRDTQ58F21 947 aaPredicted RBP11.77□□□□□ -0.53
RFFL-208ENST00000581039 FAM47CQ5HY64 1035 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 PHOSPHO2Q8TCD6 241 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 MORC4Q8TE76 937 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 PURBQ96QR8 312 aaKnown RBP11.77□□□□□ -0.53
RFFL-208ENST00000581039 SLC9A7Q96T83 725 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 WDR11Q9BZH6 1224 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 FTOQ9C0B1 505 aaKnown RBP eCLIP11.77□□□□□ -0.53
RFFL-208ENST00000581039 NAPBQ9H115 298 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 PLIN4Q96Q06 1357 aa11.77□□□□□ -0.53
RFFL-208ENST00000581039 TSPY2A6NKD2 308 aa11.76□□□□□ -0.53
RFFL-208ENST00000581039 ICAM1P05362 532 aa11.76□□□□□ -0.53
RFFL-208ENST00000581039 PURAQ00577 322 aaKnown RBP11.76□□□□□ -0.53
RFFL-208ENST00000581039 BAATQ14032 418 aaPredicted RBP11.76□□□□□ -0.53
RFFL-208ENST00000581039 TSHZ3Q63HK5 1081 aa11.76□□□□□ -0.53
RFFL-208ENST00000581039 ARNTL2Q8WYA1 636 aa11.76□□□□□ -0.53
RFFL-208ENST00000581039 MTG1Q9BT17 334 aaPredicted RBP11.76□□□□□ -0.53
RFFL-208ENST00000581039 EPHX3Q9H6B9 360 aa11.76□□□□□ -0.53
RFFL-208ENST00000581039 MTMR7Q9Y216 660 aa11.76□□□□□ -0.53
RFFL-208ENST00000581039 LOC102724159A0A0B4J2E5 919 aa11.75□□□□□ -0.53
RFFL-208ENST00000581039 KPNA6O60684 536 aa11.75□□□□□ -0.53
RFFL-208ENST00000581039 IQCF3P0C7M6 154 aa11.75□□□□□ -0.53
RFFL-208ENST00000581039 PWP2Q15269 919 aaKnown RBP11.75□□□□□ -0.53
RFFL-208ENST00000581039 NBPF20Q3BBV1 942 aa11.75□□□□□ -0.53
RFFL-208ENST00000581039 OR6J1Q8NGC5 347 aa11.75□□□□□ -0.53
RFFL-208ENST00000581039 HLA-CQ95604 372 aa11.75□□□□□ -0.53
RFFL-208ENST00000581039 NOD1Q9Y239 953 aa11.75□□□□□ -0.53
RFFL-208ENST00000581039 HCN4Q9Y3Q4 1203 aa11.75□□□□□ -0.53
RFFL-208ENST00000581039 MYH7P12883 1935 aa11.75□□□□□ -0.53
RFFL-208ENST00000581039 MYH4Q9Y623 1939 aa11.75□□□□□ -0.53
RFFL-208ENST00000581039 TCF20Q9UGU0 1960 aaKnown RBP11.75□□□□□ -0.53
RFFL-208ENST00000581039 CHD7Q9P2D1 2997 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 PRRC2BQ5JSZ5 2229 aaKnown RBP11.74□□□□□ -0.53
RFFL-208ENST00000581039 RBM47A0AV96 593 aaKnown RBP11.74□□□□□ -0.53
RFFL-208ENST00000581039 PTPDC1A2A3K4 754 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 EPOPA6NHQ4 379 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 PITPNM1O00562 1244 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 TLL1O43897 1013 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 RANBP6O60518 1105 aaKnown RBP11.74□□□□□ -0.53
RFFL-208ENST00000581039 NMT2O60551 498 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 ALDH5A1P51649 535 aaPredicted RBP11.74□□□□□ -0.53
RFFL-208ENST00000581039 TAP1Q03518 808 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 BFSP2Q13515 415 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 CCDC96Q2M329 555 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 TMEM31Q5JXX7 168 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 KRT40Q6A162 431 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 NFRKBQ6P4R8 1299 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 HERC6Q8IVU3 1022 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 SEC62Q99442 399 aaKnown RBP11.74□□□□□ -0.53
RFFL-208ENST00000581039 MPHOSPH6Q99547 160 aaKnown RBP11.74□□□□□ -0.53
RFFL-208ENST00000581039 LRFN3Q9BTN0 628 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 IL17RBQ9NRM6 502 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 ARIH1Q9Y4X5 557 aaPredicted RBP11.74□□□□□ -0.53
RFFL-208ENST00000581039 RAD50Q92878 1312 aa11.74□□□□□ -0.53
RFFL-208ENST00000581039 NKRFO15226 690 aaKnown RBP eCLIP11.73□□□□□ -0.53
RFFL-208ENST00000581039 CALML3P27482 149 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 HOXD11P31277 338 aaPredicted RBP11.73□□□□□ -0.53
RFFL-208ENST00000581039 SLC16A2P36021 539 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 CHMP4BP1P59074 171 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 PTPN11Q06124 597 aaPredicted RBP11.73□□□□□ -0.53
RFFL-208ENST00000581039 PDE4DQ08499 809 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 PPP2R5BQ15173 497 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 DCAF4Q8WV16 495 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 GBF1Q92538 1859 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 FSD1Q9BTV5 496 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 RANBP17Q9H2T7 1088 aaKnown RBP11.73□□□□□ -0.53
RFFL-208ENST00000581039 DCTPP1Q9H773 170 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 INCENPQ9NQS7 918 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 XIRP2A4UGR9 3374 aa11.73□□□□□ -0.53
RFFL-208ENST00000581039 A6NJR5 290 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 B4DLN1 442 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 NFIBO00712 420 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 BAIAP3O94812 1187 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 KCNJ6P48051 423 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 MRPL12P52815 198 aaKnown RBP11.72□□□□□ -0.53
RFFL-208ENST00000581039 CTDSPL2Q05D32 466 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 GRB10Q13322 594 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 SYDE2Q5VT97 1194 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 TTBK2Q6IQ55 1244 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 BTNL9Q6UXG8 535 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 RNF207Q6ZRF8 634 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 RASGRP2Q7LDG7 609 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 SCFD2Q8WU76 684 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 PPP1R13LQ8WUF5 828 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 ZBED2Q9BTP6 218 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 PNMA2Q9UL42 364 aa11.72□□□□□ -0.53
RFFL-208ENST00000581039 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.72□□□□□ -0.53
RFFL-208ENST00000581039 TTC41PQ6P2S7 1318 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms