RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MCF2L2Q86YR7 1114 aa27.77■■■□□ 2.04
SHMT1-206ENST00000579558 KLHDC9Q8NEP7 349 aa27.77■■■□□ 2.04
SHMT1-206ENST00000579558 DNERQ8NFT8 737 aa27.77■■■□□ 2.04
SHMT1-206ENST00000579558 MPHOSPH6Q99547 160 aaKnown RBP27.77■■■□□ 2.04
SHMT1-206ENST00000579558 TSEN34Q9BSV6 310 aaKnown RBP27.77■■■□□ 2.04
SHMT1-206ENST00000579558 MYL10Q9BUA6 226 aa27.77■■■□□ 2.04
SHMT1-206ENST00000579558 MAF1Q9H063 256 aa27.77■■■□□ 2.04
SHMT1-206ENST00000579558 RIOX1Q9H6W3 641 aa27.77■■■□□ 2.04
SHMT1-206ENST00000579558 MYADML2A6NDP7 307 aa27.76■■■□□ 2.03
SHMT1-206ENST00000579558 GJA9P57773 515 aa27.76■■■□□ 2.03
SHMT1-206ENST00000579558 TAPT1Q6NXT6 567 aa27.76■■■□□ 2.03
SHMT1-206ENST00000579558 CTCFLQ8NI51 663 aaPredicted RBP27.76■■■□□ 2.03
SHMT1-206ENST00000579558 TBC1D5Q92609 795 aa27.76■■■□□ 2.03
SHMT1-206ENST00000579558 MAP3K14Q99558 947 aa27.76■■■□□ 2.03
SHMT1-206ENST00000579558 LRRC2Q9BYS8 371 aa27.76■■■□□ 2.03
SHMT1-206ENST00000579558 UPF3AQ9H1J1 476 aaKnown RBP27.76■■■□□ 2.03
SHMT1-206ENST00000579558 PDGFCQ9NRA1 345 aa27.76■■■□□ 2.03
SHMT1-206ENST00000579558 ATP11BQ9Y2G3 1177 aa27.76■■■□□ 2.03
SHMT1-206ENST00000579558 PPP1R11O60927 126 aaPredicted RBP27.75■■■□□ 2.03
SHMT1-206ENST00000579558 CST5P28325 142 aaPredicted RBP27.75■■■□□ 2.03
SHMT1-206ENST00000579558 LIFRP42702 1097 aa27.75■■■□□ 2.03
SHMT1-206ENST00000579558 PDE4DQ08499 809 aa27.75■■■□□ 2.03
SHMT1-206ENST00000579558 NEK1Q96PY6 1258 aa27.75■■■□□ 2.03
SHMT1-206ENST00000579558 PIGSQ96S52 555 aa27.75■■■□□ 2.03
SHMT1-206ENST00000579558 A0A1W2PQ45 241 aaPredicted RBP27.74■■■□□ 2.03
SHMT1-206ENST00000579558 A0A1W2PQY0 241 aa27.74■■■□□ 2.03
SHMT1-206ENST00000579558 MOXD2PA6NHM9 499 aa27.74■■■□□ 2.03
SHMT1-206ENST00000579558 CYTH3O43739 400 aa27.74■■■□□ 2.03
SHMT1-206ENST00000579558 KIF5BP33176 963 aa27.74■■■□□ 2.03
SHMT1-206ENST00000579558 ACLYP53396 1101 aa27.74■■■□□ 2.03
SHMT1-206ENST00000579558 IRX5P78411 483 aaPredicted RBP27.74■■■□□ 2.03
SHMT1-206ENST00000579558 KCNA10Q16322 511 aa27.74■■■□□ 2.03
SHMT1-206ENST00000579558 IQSEC1Q6DN90 963 aa27.74■■■□□ 2.03
SHMT1-206ENST00000579558 RASEFQ8IZ41 740 aa27.74■■■□□ 2.03
SHMT1-206ENST00000579558 SYTL5Q8TDW5 730 aaPredicted RBP27.74■■■□□ 2.03
SHMT1-206ENST00000579558 GNEQ9Y223 722 aaKnown RBP27.74■■■□□ 2.03
SHMT1-206ENST00000579558 PCDHA1Q9Y5I3 950 aa27.74■■■□□ 2.03
SHMT1-206ENST00000579558 BAZ2BQ9UIF8 2168 aaKnown RBP27.74■■■□□ 2.03
SHMT1-206ENST00000579558 DNAH12Q6ZR08 3092 aa27.73■■■□□ 2.03
SHMT1-206ENST00000579558 B4DLN1 442 aa27.73■■■□□ 2.03
SHMT1-206ENST00000579558 SMPD1P17405 629 aa27.73■■■□□ 2.03
SHMT1-206ENST00000579558 MRPL12P52815 198 aaKnown RBP27.73■■■□□ 2.03
SHMT1-206ENST00000579558 KRT32Q14532 448 aa27.73■■■□□ 2.03
SHMT1-206ENST00000579558 SNX17Q15036 470 aa27.73■■■□□ 2.03
SHMT1-206ENST00000579558 TSGA10IPQ3SY00 556 aa27.73■■■□□ 2.03
SHMT1-206ENST00000579558 TRIM60Q495X7 471 aa27.73■■■□□ 2.03
SHMT1-206ENST00000579558 CCSAPQ6IQ19 270 aaPredicted RBP27.73■■■□□ 2.03
SHMT1-206ENST00000579558 TLK2Q86UE8 772 aa27.73■■■□□ 2.03
SHMT1-206ENST00000579558 PCSK9Q8NBP7 692 aaKnown RBP27.73■■■□□ 2.03
SHMT1-206ENST00000579558 PCDH10Q9P2E7 1040 aa27.73■■■□□ 2.03
SHMT1-206ENST00000579558 RBM27Q9P2N5 1060 aaKnown RBP27.73■■■□□ 2.03
SHMT1-206ENST00000579558 CFBP00751 764 aa27.72■■■□□ 2.03
SHMT1-206ENST00000579558 EDNRBP24530 442 aa27.72■■■□□ 2.03
SHMT1-206ENST00000579558 TRAF1Q13077 416 aa27.72■■■□□ 2.03
SHMT1-206ENST00000579558 GNASQ5JWF2 1037 aa27.72■■■□□ 2.03
SHMT1-206ENST00000579558 TAAR1Q96RJ0 339 aa27.72■■■□□ 2.03
SHMT1-206ENST00000579558 AP5M1Q9H0R1 490 aa27.72■■■□□ 2.03
SHMT1-206ENST00000579558 SLC12A7Q9Y666 1083 aa27.72■■■□□ 2.03
SHMT1-206ENST00000579558 PNMA6FA0A0J9YX94 578 aa27.71■■■□□ 2.03
SHMT1-206ENST00000579558 CALM1P0DP23 149 aa27.71■■■□□ 2.03
SHMT1-206ENST00000579558 CALM2P0DP24 149 aa27.71■■■□□ 2.03
SHMT1-206ENST00000579558 CALM3P0DP25 149 aa27.71■■■□□ 2.03
SHMT1-206ENST00000579558 ADCK5Q3MIX3 580 aa27.71■■■□□ 2.03
SHMT1-206ENST00000579558 C1orf53Q5VUE5 145 aa27.71■■■□□ 2.03
SHMT1-206ENST00000579558 PIBF1Q8WXW3 757 aa27.71■■■□□ 2.03
SHMT1-206ENST00000579558 PRO3102Q9H379 93 aa27.71■■■□□ 2.03
SHMT1-206ENST00000579558 STARD7Q9NQZ5 370 aa27.71■■■□□ 2.03
SHMT1-206ENST00000579558 COL20A1Q9P218 1284 aa27.71■■■□□ 2.03
SHMT1-206ENST00000579558 OPLAHO14841 1288 aa27.7■■■□□ 2.02
SHMT1-206ENST00000579558 DYNC1LI2O43237 492 aaPredicted RBP27.7■■■□□ 2.02
SHMT1-206ENST00000579558 ASGR1P07306 291 aa27.7■■■□□ 2.02
SHMT1-206ENST00000579558 RXRAP19793 462 aa27.7■■■□□ 2.02
SHMT1-206ENST00000579558 PTGS1P23219 599 aa27.7■■■□□ 2.02
SHMT1-206ENST00000579558 GNAQP50148 359 aa27.7■■■□□ 2.02
SHMT1-206ENST00000579558 NKX3-2P78367 333 aa27.7■■■□□ 2.02
SHMT1-206ENST00000579558 DHX32Q7L7V1 743 aaKnown RBP27.7■■■□□ 2.02
SHMT1-206ENST00000579558 NSUN6Q8TEA1 469 aaKnown RBP27.7■■■□□ 2.02
SHMT1-206ENST00000579558 LZTS2Q9BRK4 669 aa27.7■■■□□ 2.02
SHMT1-206ENST00000579558 SPZ1Q9BXG8 430 aa27.7■■■□□ 2.02
SHMT1-206ENST00000579558 CTAGE5O15320 804 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 REC8O95072 547 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 MAGEA10P43363 369 aaPredicted RBP27.69■■■□□ 2.02
SHMT1-206ENST00000579558 BEX3Q00994 111 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 TMEM63BQ5T3F8 832 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 SGMS1Q86VZ5 419 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 RAB11FIP4Q86YS3 637 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 TCEANC2Q96MN5 208 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 GLT1D1Q96MS3 346 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 RMDN3Q96TC7 470 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 GDF15Q99988 308 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 WDR11Q9BZH6 1224 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 PRKAG2Q9UGJ0 569 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 Q9Y3F1 56 aa27.69■■■□□ 2.02
SHMT1-206ENST00000579558 RBM47A0AV96 593 aaKnown RBP27.68■■■□□ 2.02
SHMT1-206ENST00000579558 PLEKHA8P1O95397 391 aa27.68■■■□□ 2.02
SHMT1-206ENST00000579558 HSD17B4P51659 736 aa27.68■■■□□ 2.02
SHMT1-206ENST00000579558 EXOSC10Q01780 885 aaKnown RBP27.68■■■□□ 2.02
SHMT1-206ENST00000579558 DUSP28Q4G0W2 176 aa27.68■■■□□ 2.02
SHMT1-206ENST00000579558 RRP36Q96EU6 259 aaKnown RBP27.68■■■□□ 2.02
SHMT1-206ENST00000579558 SMARCA1P28370 1054 aa27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms