RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 GRM4Q14833 912 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 USP17L2Q6R6M4 530 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 NBPF5PQ86XG9 351 aaPredicted RBP19.05■□□□□ 0.64
VPS53-215ENST00000573028 UIMC1Q96RL1 719 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 IFIH1Q9BYX4 1025 aaKnown RBP19.05■□□□□ 0.64
VPS53-215ENST00000573028 BARHL2Q9NY43 387 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 EHD2Q9NZN4 543 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 SRP68Q9UHB9 627 aaKnown RBP19.05■□□□□ 0.64
VPS53-215ENST00000573028 BICDL2A1A5D9 508 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 SMCO2A6NFE2 343 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 AKR1B10O60218 316 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 GNAQP50148 359 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 AMOTL1Q8IY63 956 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 SELENOOQ9BVL4 669 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 SH3GLB2Q9NR46 395 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 ANKIB1Q9P2G1 1089 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 CAPN6Q9Y6Q1 641 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 ZNF263O14978 683 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 EPHB6O15197 1021 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 MEA1Q16626 185 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 SBK1Q52WX2 424 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 COG1Q8WTW3 980 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 HDAC7Q8WUI4 952 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 NUP58Q9BVL2 599 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 TANGO6Q9C0B7 1094 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 LRRC31Q6UY01 552 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 FAM114A1Q8IWE2 563 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 TTYH3Q9C0H2 523 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 UBA5Q9GZZ9 404 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 EIF3CLB5ME19 914 aaKnown RBP19.04■□□□□ 0.64
VPS53-215ENST00000573028 LDHBP07195 334 aaKnown RBP19.04■□□□□ 0.64
VPS53-215ENST00000573028 MCM3P25205 808 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 GRIK5Q16478 980 aa19.04■□□□□ 0.64
VPS53-215ENST00000573028 EIF3CQ99613 913 aaKnown RBP19.04■□□□□ 0.64
VPS53-215ENST00000573028 NONOQ15233 471 aaKnown RBP eCLIP19.03■□□□□ 0.64
VPS53-215ENST00000573028 DNAJC21Q5F1R6 531 aaKnown RBP19.03■□□□□ 0.64
VPS53-215ENST00000573028 SOGA3Q5TF21 947 aa19.03■□□□□ 0.64
VPS53-215ENST00000573028 CCDC70Q6NSX1 233 aa19.03■□□□□ 0.64
VPS53-215ENST00000573028 SND1Q7KZF4 910 aaKnown RBP eCLIP19.03■□□□□ 0.64
VPS53-215ENST00000573028 NOC3LQ8WTT2 800 aaKnown RBP19.03■□□□□ 0.64
VPS53-215ENST00000573028 TSPYL1Q9H0U9 437 aa19.03■□□□□ 0.64
VPS53-215ENST00000573028 M0R2N6 131 aa19.03■□□□□ 0.64
VPS53-215ENST00000573028 VAV2P52735 878 aa19.03■□□□□ 0.64
VPS53-215ENST00000573028 LRRC41Q15345 812 aa19.03■□□□□ 0.64
VPS53-215ENST00000573028 ENOX2Q16206 610 aaKnown RBP19.03■□□□□ 0.64
VPS53-215ENST00000573028 MIIPQ5JXC2 388 aa19.03■□□□□ 0.64
VPS53-215ENST00000573028 RRAGAQ7L523 313 aa19.03■□□□□ 0.64
VPS53-215ENST00000573028 TMEM260Q9NX78 707 aa19.03■□□□□ 0.64
VPS53-215ENST00000573028 NCK2O43639 380 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 USO1O60763 962 aaKnown RBP19.02■□□□□ 0.64
VPS53-215ENST00000573028 EIF4A3P38919 411 aaKnown RBP19.02■□□□□ 0.64
VPS53-215ENST00000573028 NFRKBQ6P4R8 1299 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 POTEDQ86YR6 584 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 TBCKQ8TEA7 893 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 CALML4Q96GE6 196 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 CDK5RAP3Q96JB5 506 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 SEMA6BQ9H3T3 888 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 ZPR1O75312 459 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 TACC1O75410 805 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 CCDC181Q5TID7 509 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 CCDC170Q8IYT3 715 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 KIAA0895Q8NCT3 520 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 LRRC1Q9BTT6 524 aa19.02■□□□□ 0.64
VPS53-215ENST00000573028 MYH14Q7Z406 1995 aaKnown RBP19.02■□□□□ 0.64
VPS53-215ENST00000573028 XIRP1Q702N8 1843 aaKnown RBP19.02■□□□□ 0.64
VPS53-215ENST00000573028 FLT1P17948 1338 aa19.02■□□□□ 0.63
VPS53-215ENST00000573028 CCNI2Q6ZMN8 369 aaPredicted RBP19.02■□□□□ 0.63
VPS53-215ENST00000573028 CCDC155Q8N6L0 562 aa19.02■□□□□ 0.63
VPS53-215ENST00000573028 LINC00116Q8NCU8 138 aa19.02■□□□□ 0.63
VPS53-215ENST00000573028 DMGDHQ9UI17 866 aaKnown RBP19.02■□□□□ 0.63
VPS53-215ENST00000573028 ABCA3Q99758 1704 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 SETDB2Q96T68 719 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 ARHGAP20Q9P2F6 1191 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 PCDHA13Q9Y5I0 950 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 NHSL1Q5SYE7 1610 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 GOLGA6BA6NDN3 693 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 BUB1O43683 1085 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 KIF11P52732 1056 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 AMPD3Q01432 767 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 TDRD12Q587J7 1177 aaKnown RBP19.01■□□□□ 0.63
VPS53-215ENST00000573028 TTC19Q6DKK2 380 aaPredicted RBP19.01■□□□□ 0.63
VPS53-215ENST00000573028 NEK8Q86SG6 692 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 RETREG2Q8NC44 543 aa19.01■□□□□ 0.63
VPS53-215ENST00000573028 RRP36Q96EU6 259 aaKnown RBP19.01■□□□□ 0.63
VPS53-215ENST00000573028 SEC63Q9UGP8 760 aaKnown RBP19.01■□□□□ 0.63
VPS53-215ENST00000573028 MYL1P05976 194 aa19■□□□□ 0.63
VPS53-215ENST00000573028 CLEC4GQ6UXB4 293 aa19■□□□□ 0.63
VPS53-215ENST00000573028 PIGSQ96S52 555 aa19■□□□□ 0.63
VPS53-215ENST00000573028 C6orf50Q9HD87 102 aa19■□□□□ 0.63
VPS53-215ENST00000573028 NLRC4Q9NPP4 1024 aa19■□□□□ 0.63
VPS53-215ENST00000573028 SSBP05455 408 aaKnown RBP eCLIP19■□□□□ 0.63
VPS53-215ENST00000573028 CNNM4Q6P4Q7 775 aa19■□□□□ 0.63
VPS53-215ENST00000573028 SV2BQ7L1I2 683 aa19■□□□□ 0.63
VPS53-215ENST00000573028 CACNA2D4Q7Z3S7 1137 aa19■□□□□ 0.63
VPS53-215ENST00000573028 MSL3Q8N5Y2 521 aaKnown RBP19■□□□□ 0.63
VPS53-215ENST00000573028 RPGRIP1Q96KN7 1286 aa19■□□□□ 0.63
VPS53-215ENST00000573028 NDST4Q9H3R1 872 aa19■□□□□ 0.63
VPS53-215ENST00000573028 SPTY2D1Q68D10 685 aaPredicted RBP19■□□□□ 0.63
VPS53-215ENST00000573028 IQCEQ6IPM2 695 aa19■□□□□ 0.63
VPS53-215ENST00000573028 KRT25Q7Z3Z0 450 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms