RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-218ENST00000566029 CNGA4Q8IV77 575 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 KCNN1Q92952 543 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 IQCGQ9H095 443 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 CNOT8Q9UFF9 292 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 SPDYE2BA6NHP3 402 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 BUB1BO60566 1050 aaPredicted RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 PFDN1O60925 122 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SPDYE6P0CI01 402 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ANTXR2P58335 489 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SPAG1Q07617 926 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 IFT88Q13099 833 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 USP4Q13107 963 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 QPCTQ16769 361 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SPDYE2Q495Y8 402 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SH3RF1Q7Z6J0 888 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ATP8B4Q8TF62 1192 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ABTB1Q969K4 478 aaPredicted RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 CWC25Q9NXE8 425 aaPredicted RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 ATXN10Q9UBB4 475 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 PHF24Q9UPV7 400 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 BCL9LQ86UU0 1499 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ALDH3A1P30838 453 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 MYBPC3Q14896 1274 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 LRRC23Q53EV4 343 aaPredicted RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 NT5DC1Q5TFE4 455 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SREK1Q8WXA9 508 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 NAF1Q96HR8 494 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 SEC16BQ96JE7 1060 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ZIM3Q96PE6 472 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ATP8A2Q9NTI2 1148 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ADAM22Q9P0K1 906 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 PASKQ96RG2 1323 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 LRRC10BA6NIK2 292 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 E7ENQ6 273 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SFSWAPQ12872 951 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 KIF6Q6ZMV9 814 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 PIGWQ7Z7B1 504 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 EAF2Q96CJ1 260 aaPredicted RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 GUCA1BQ9UMX6 200 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 AGAP1Q9UPQ3 857 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 AGLP35573 1532 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 CCND1P24385 295 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 MATR3P43243 847 aaKnown RBP eCLIP3.2□□□□□ -1.96e-7■■■□□ 15.5
CHD9-218ENST00000566029 MAP7D1Q3KQU3 841 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SESTD1Q86VW0 696 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ERICH1Q86X53 443 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 FBXL16Q8N461 479 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 FAM208AQ9UK61 1670 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 RBM47A0AV96 593 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 SPDYE5A6NIY4 337 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SARSP49591 514 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 SF3B3Q15393 1217 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 CACNA2D4Q7Z3S7 1137 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 PRPF31Q8WWY3 499 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 MOAP1Q96BY2 351 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 TIPINQ9BVW5 301 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 HYOU1Q9Y4L1 999 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 MROH2AA6NES4 1674 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 A0A1W2PQC6 194 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 EIF2S1P05198 315 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 VCAM1P19320 739 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 KIF5AQ12840 1032 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 CCDC152Q4G0S7 254 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 CNBD1Q8NA66 436 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 CASKIN2Q8WXE0 1202 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 DDX27Q96GQ7 796 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 TSC22D3Q99576 134 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ZRANB1Q9UGI0 708 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 TMEM98Q9Y2Y6 226 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 TMEM94Q12767 1356 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SFI1A8K8P3 1242 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 HNRNPCL2B2RXH8 293 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 HNRNPCL1O60812 293 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 STMN1P16949 149 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 KIF11P52732 1056 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ERVK-24P63145 666 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 GALNTL6Q49A17 601 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 C11orf88Q6PI97 169 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SYNPOQ8N3V7 929 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 CCDC155Q8N6L0 562 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 AGAP11Q8TF27 550 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 TSPAN18Q96SJ8 248 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 THAP9Q9H5L6 903 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 GPHNQ9NQX3 736 aaPredicted RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 PANK4Q9NVE7 773 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 TRIM10Q9UDY6 481 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 STK38LQ9Y2H1 464 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 NFE2L3Q9Y4A8 694 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 PXDNLA1KZ92 1463 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 DLC1Q96QB1 1528 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 COPB1P53618 953 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 MRPS35P82673 323 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 RASA3Q14644 834 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 IFI16Q16666 785 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 DAB2IPQ5VWQ8 1189 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 CACNA2D3Q8IZS8 1091 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 SEPT8Q92599 483 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 ARHGEF1Q92888 912 aaKnown RBP3.2□□□□□ -1.9
CHD9-218ENST00000566029 ZWILCHQ9H900 591 aa3.2□□□□□ -1.9
CHD9-218ENST00000566029 MIS18AQ9NYP9 233 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms