RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 TMEM260Q9NX78 707 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 FBXO40Q9UH90 709 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 CIZ1Q9ULV3 898 aaPredicted RBP19.03■□□□□ 0.64
VPS4A-202ENST00000562754 MYH15Q9Y2K3 1946 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 ZNFX1Q9P2E3 1918 aaKnown RBP19.02■□□□□ 0.64
VPS4A-202ENST00000562754 PIK3CDO00329 1044 aa19.02■□□□□ 0.64
VPS4A-202ENST00000562754 ZSCAN22P10073 491 aaPredicted RBP19.02■□□□□ 0.64
VPS4A-202ENST00000562754 MRPL12P52815 198 aaKnown RBP19.02■□□□□ 0.64
VPS4A-202ENST00000562754 RESTQ13127 1097 aa19.02■□□□□ 0.64
VPS4A-202ENST00000562754 SAFBQ15424 915 aaKnown RBP eCLIP19.02■□□□□ 0.64
VPS4A-202ENST00000562754 FOXD4L5Q5VV16 416 aaPredicted RBP19.02■□□□□ 0.64
VPS4A-202ENST00000562754 MCTP1Q6DN14 999 aa19.02■□□□□ 0.64
VPS4A-202ENST00000562754 FERMT3Q86UX7 667 aa19.02■□□□□ 0.64
VPS4A-202ENST00000562754 MCF2L2Q86YR7 1114 aa19.02■□□□□ 0.64
VPS4A-202ENST00000562754 REXO1Q8N1G1 1221 aaKnown RBP19.02■□□□□ 0.64
VPS4A-202ENST00000562754 FOXD4L4Q8WXT5 416 aaPredicted RBP19.02■□□□□ 0.64
VPS4A-202ENST00000562754 GLT8D2Q9H1C3 349 aa19.02■□□□□ 0.64
VPS4A-202ENST00000562754 COL20A1Q9P218 1284 aa19.02■□□□□ 0.64
VPS4A-202ENST00000562754 BIN2Q9UBW5 565 aaPredicted RBP19.02■□□□□ 0.64
VPS4A-202ENST00000562754 PCDHA6Q9UN73 950 aa19.02■□□□□ 0.64
VPS4A-202ENST00000562754 PCDHA8Q9Y5H6 950 aa19.02■□□□□ 0.64
VPS4A-202ENST00000562754 FAM205CA6NFA0 338 aa19.01■□□□□ 0.63
VPS4A-202ENST00000562754 GCOM1H8Y6P7 765 aaPredicted RBP19.01■□□□□ 0.63
VPS4A-202ENST00000562754 POLR2MP0CAP2 368 aa19.01■□□□□ 0.63
VPS4A-202ENST00000562754 U2AF2P26368 475 aaKnown RBP eCLIP19.01■□□□□ 0.63
VPS4A-202ENST00000562754 BAATQ14032 418 aaPredicted RBP19.01■□□□□ 0.63
VPS4A-202ENST00000562754 EARS2Q5JPH6 523 aaKnown RBP19.01■□□□□ 0.63
VPS4A-202ENST00000562754 WDR78Q5VTH9 848 aa19.01■□□□□ 0.63
VPS4A-202ENST00000562754 JAKMIP3Q5VZ66 844 aa19.01■□□□□ 0.63
VPS4A-202ENST00000562754 BICD2Q8TD16 824 aa19.01■□□□□ 0.63
VPS4A-202ENST00000562754 SYTL5Q8TDW5 730 aaPredicted RBP19.01■□□□□ 0.63
VPS4A-202ENST00000562754 PGBD1Q96JS3 809 aa19.01■□□□□ 0.63
VPS4A-202ENST00000562754 FOXP1Q9H334 677 aaPredicted RBP19.01■□□□□ 0.63
VPS4A-202ENST00000562754 BRMS1Q9HCU9 246 aa19.01■□□□□ 0.63
VPS4A-202ENST00000562754 SAGE1Q9NXZ1 904 aa19.01■□□□□ 0.63
VPS4A-202ENST00000562754 CYP39A1Q9NYL5 469 aa19.01■□□□□ 0.63
VPS4A-202ENST00000562754 DOCK3Q8IZD9 2030 aa19.01■□□□□ 0.63
VPS4A-202ENST00000562754 MYH7BA7E2Y1 1941 aa19■□□□□ 0.63
VPS4A-202ENST00000562754 F13A1P00488 732 aa19■□□□□ 0.63
VPS4A-202ENST00000562754 PDIA4P13667 645 aaKnown RBP19■□□□□ 0.63
VPS4A-202ENST00000562754 MAPK4P31152 587 aa19■□□□□ 0.63
VPS4A-202ENST00000562754 RPS6P62753 249 aaKnown RBP19■□□□□ 0.63
VPS4A-202ENST00000562754 RNF207Q6ZRF8 634 aa19■□□□□ 0.63
VPS4A-202ENST00000562754 TEX2Q8IWB9 1127 aa19■□□□□ 0.63
VPS4A-202ENST00000562754 CHMP5Q9NZZ3 219 aa19■□□□□ 0.63
VPS4A-202ENST00000562754 CTGFP29279 349 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 NUCB2P80303 420 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 MAP2K1Q02750 393 aaPredicted RBP18.99■□□□□ 0.63
VPS4A-202ENST00000562754 GPR142Q7Z601 462 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 FCHSD1Q86WN1 690 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 NOSTRINQ8IVI9 506 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 SAMD3Q8N6K7 520 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 PURBQ96QR8 312 aaKnown RBP18.99■□□□□ 0.63
VPS4A-202ENST00000562754 MMP19Q99542 508 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 ANO3Q9BYT9 981 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 MAF1Q9H063 256 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 PLXNA1Q9UIW2 1896 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 PFASO15067 1338 aa18.99■□□□□ 0.63
VPS4A-202ENST00000562754 LRRC37A2A6NM11 1700 aa18.98■□□□□ 0.63
VPS4A-202ENST00000562754 ECM2O94769 699 aaPredicted RBP18.98■□□□□ 0.63
VPS4A-202ENST00000562754 CAP1Q01518 475 aa18.98■□□□□ 0.63
VPS4A-202ENST00000562754 AP3B2Q13367 1082 aa18.98■□□□□ 0.63
VPS4A-202ENST00000562754 KRT25Q7Z3Z0 450 aa18.98■□□□□ 0.63
VPS4A-202ENST00000562754 PLEKHH3Q7Z736 793 aa18.98■□□□□ 0.63
VPS4A-202ENST00000562754 ANKRD35Q8N283 1001 aa18.98■□□□□ 0.63
VPS4A-202ENST00000562754 MAP3K20Q9NYL2 800 aaKnown RBP18.98■□□□□ 0.63
VPS4A-202ENST00000562754 DNAJC25-GNG10A0A024R161 153 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 FCER1AP12319 257 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 PTPREP23469 700 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 LACTBP83111 547 aaPredicted RBP18.97■□□□□ 0.63
VPS4A-202ENST00000562754 CNTN2Q02246 1040 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 GNL2Q13823 731 aaKnown RBP18.97■□□□□ 0.63
VPS4A-202ENST00000562754 GRB14Q14449 540 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 KCTD2Q14681 263 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 PIK3AP1Q6ZUJ8 805 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 CCAR1Q8IX12 1150 aaKnown RBP18.97■□□□□ 0.63
VPS4A-202ENST00000562754 FAM133AQ8N9E0 248 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 TAAR1Q96RJ0 339 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 ARHGAP39Q9C0H5 1083 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 WBP1LQ9NX94 342 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 ASTN1O14525 1302 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 FRMPD4Q14CM0 1322 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 RPTORQ8N122 1335 aa18.97■□□□□ 0.63
VPS4A-202ENST00000562754 CCDC194A0A1B0GVG4 234 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 SPDYE3A6NKU9 549 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 GPR25O00155 361 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 FOSP01100 380 aaPredicted RBP18.96■□□□□ 0.63
VPS4A-202ENST00000562754 PGK2P07205 417 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 ADORA2AP29274 412 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 NONOQ15233 471 aaKnown RBP eCLIP18.96■□□□□ 0.63
VPS4A-202ENST00000562754 FAM173BQ6P4H8 233 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 BRAPQ7Z569 592 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 ABRAQ8N0Z2 381 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 FGD4Q96M96 766 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 TSKSQ9UJT2 592 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 IVNS1ABPQ9Y6Y0 642 aa18.96■□□□□ 0.63
VPS4A-202ENST00000562754 SLC15A5A6NIM6 579 aa18.95■□□□□ 0.62
VPS4A-202ENST00000562754 POTEB2H3BUK9 544 aa18.95■□□□□ 0.62
VPS4A-202ENST00000562754 WNT7AO00755 349 aa18.95■□□□□ 0.62
VPS4A-202ENST00000562754 EDIL3O43854 480 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms