RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 LENG1Q96BZ8 264 aaPredicted RBP9.9□□□□□ -0.82
USP3-217ENST00000560070 SHISA4Q96DD7 197 aa9.9□□□□□ -0.82
USP3-217ENST00000560070 SPZ1Q9BXG8 430 aa9.9□□□□□ -0.82
USP3-217ENST00000560070 PAK6Q9NQU5 681 aaPredicted RBP9.9□□□□□ -0.82
USP3-217ENST00000560070 PDGFCQ9NRA1 345 aa9.9□□□□□ -0.82
USP3-217ENST00000560070 RBM28Q9NW13 759 aaKnown RBP9.9□□□□□ -0.82
USP3-217ENST00000560070 DDX20Q9UHI6 824 aaKnown RBP9.9□□□□□ -0.82
USP3-217ENST00000560070 PNMA2Q9UL42 364 aa9.9□□□□□ -0.82
USP3-217ENST00000560070 FAM184BQ9ULE4 1060 aa9.9□□□□□ -0.82
USP3-217ENST00000560070 ATAD5Q96QE3 1844 aa9.9□□□□□ -0.82
USP3-217ENST00000560070 ZSWIM8A7E2V4 1837 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 ASB14A6NK59 587 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 EIF5BO60841 1220 aaKnown RBP9.89□□□□□ -0.83
USP3-217ENST00000560070 IGHA2P01877 340 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 ZNF865P0CJ78 1059 aaPredicted RBP9.89□□□□□ -0.83
USP3-217ENST00000560070 CYBAP13498 195 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 EIF2AK2P19525 551 aaKnown RBP9.89□□□□□ -0.83
USP3-217ENST00000560070 PTGS1P23219 599 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 NEK4P51957 841 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 IRX5P78411 483 aaPredicted RBP9.89□□□□□ -0.83
USP3-217ENST00000560070 MLLT1Q03111 559 aaPredicted RBP9.89□□□□□ -0.83
USP3-217ENST00000560070 PDE4DQ08499 809 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 TMEM63BQ5T3F8 832 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 GJC2Q5T442 439 aaPredicted RBP9.89□□□□□ -0.83
USP3-217ENST00000560070 ARHGEF16Q5VV41 709 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 DIS3LQ8TF46 1054 aaKnown RBP9.89□□□□□ -0.83
USP3-217ENST00000560070 PHKBQ93100 1093 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 PAWRQ96IZ0 340 aaKnown RBP9.89□□□□□ -0.83
USP3-217ENST00000560070 COL20A1Q9P218 1284 aa9.89□□□□□ -0.83
USP3-217ENST00000560070 ASTN1O14525 1302 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.88□□□□□ -0.83
USP3-217ENST00000560070 GCOM1H8Y6P7 765 aaPredicted RBP9.88□□□□□ -0.83
USP3-217ENST00000560070 OPLAHO14841 1288 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 SEPT4O43236 478 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 PGK1P00558 417 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 POLR2MP0CAP2 368 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 MYCLP12524 364 aaPredicted RBP9.88□□□□□ -0.83
USP3-217ENST00000560070 SMARCA1P28370 1054 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 RGS19P49795 217 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 ALDH5A1P51649 535 aaPredicted RBP9.88□□□□□ -0.83
USP3-217ENST00000560070 AK2P54819 239 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 ANAPC15P60006 121 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 USP17L6PQ6QN14 398 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 MAMDC4Q6UXC1 1216 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.88□□□□□ -0.837e-6■□□□□ 10.8
USP3-217ENST00000560070 ZNF467Q7Z7K2 595 aaPredicted RBP9.88□□□□□ -0.83
USP3-217ENST00000560070 FBXO16Q8IX29 292 aaPredicted RBP9.88□□□□□ -0.83
USP3-217ENST00000560070 RGS22Q8NE09 1264 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 RMDN3Q96TC7 470 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 C22orf23Q9BZE7 217 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 ADD3Q9UEY8 706 aaKnown RBP9.88□□□□□ -0.83
USP3-217ENST00000560070 LAMB1P07942 1786 aa9.88□□□□□ -0.83
USP3-217ENST00000560070 SYNGAP1Q96PV0 1343 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 CCDC196A0A1B0GTZ2 297 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 DYNC1LI2O43237 492 aaPredicted RBP9.87□□□□□ -0.83
USP3-217ENST00000560070 FARP2O94887 1054 aaPredicted RBP9.87□□□□□ -0.83
USP3-217ENST00000560070 RARBP10826 455 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 ADCYAP1R1P41586 468 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 AKAP17AQ02040 695 aaKnown RBP9.87□□□□□ -0.83
USP3-217ENST00000560070 TNFAIP2Q03169 654 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 FUT2Q10981 343 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 TRAF1Q13077 416 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 UBE2SQ16763 222 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 CCDC144BQ3MJ40 725 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 MSL3Q8N5Y2 521 aaKnown RBP9.87□□□□□ -0.83
USP3-217ENST00000560070 NECAB1Q8N987 351 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 SMARCC2Q8TAQ2 1214 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 DPF3Q92784 378 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 CUL5Q93034 780 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 FERMT2Q96AC1 680 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 ZNF274Q96GC6 653 aaPredicted RBP9.87□□□□□ -0.83
USP3-217ENST00000560070 SLC26A6Q9BXS9 759 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 AGXT2Q9BYV1 514 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 CRISPLD2Q9H0B8 497 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 SLKQ9H2G2 1235 aaPredicted RBP9.87□□□□□ -0.83
USP3-217ENST00000560070 ABHD16BQ9H3Z7 469 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 PSTPIP2Q9H939 334 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 XPNPEP3Q9NQH7 507 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 OGDHLQ9ULD0 1010 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 TPCN1Q9ULQ1 816 aa9.87□□□□□ -0.83
USP3-217ENST00000560070 GREB1LQ9C091 1923 aaPredicted RBP9.87□□□□□ -0.83
USP3-217ENST00000560070 C19orf67A6NJJ6 358 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 CPLX1O14810 134 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 SORBS3O60504 671 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 AKR1A1P14550 325 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 HSD17B4P51659 736 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 ATN1P54259 1190 aaPredicted RBP9.86□□□□□ -0.83
USP3-217ENST00000560070 NAPAP54920 295 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 SSRP1Q08945 709 aaKnown RBP9.86□□□□□ -0.83
USP3-217ENST00000560070 WWC2Q6AWC2 1192 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 TAPT1Q6NXT6 567 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 SEPT14Q6ZU15 432 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 FBXL16Q8N461 479 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 ARRDC4Q8NCT1 418 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 NSUN6Q8TEA1 469 aaKnown RBP9.86□□□□□ -0.83
USP3-217ENST00000560070 VTI1AQ96AJ9 217 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 SENP6Q9GZR1 1112 aaPredicted RBP9.86□□□□□ -0.83
USP3-217ENST00000560070 UPF2Q9HAU5 1272 aaKnown RBP9.86□□□□□ -0.83
USP3-217ENST00000560070 RTEL1Q9NZ71 1219 aa9.86□□□□□ -0.83
USP3-217ENST00000560070 CNTNAP5Q8WYK1 1306 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms