RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 CALML3P27482 149 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 GNA11P29992 359 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 COPB2P35606 906 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 KRT2P35908 639 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 CLCN6P51797 869 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 MRPL12P52815 198 aaKnown RBP11.03□□□□□ -0.64
CUX1-216ENST00000558469 GNL2Q13823 731 aaKnown RBP11.03□□□□□ -0.64
CUX1-216ENST00000558469 SAFBQ15424 915 aaKnown RBP eCLIP11.03□□□□□ -0.64
CUX1-216ENST00000558469 UBE2SQ16763 222 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 MCTP1Q6DN14 999 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 MCF2L2Q86YR7 1114 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 BLIDQ8IZY5 108 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 FAM177A1Q8N128 213 aaPredicted RBP11.03□□□□□ -0.64
CUX1-216ENST00000558469 DNAJC5GQ8N7S2 189 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 CHST13Q8NET6 341 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 TBC1D5Q92609 795 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 PORCNQ9H237 461 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 MROH8Q9H579 483 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 ACAD9Q9H845 621 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 EFCC1Q9HA90 598 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 BRMS1Q9HCU9 246 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 PCDHA4Q9UN74 947 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 BTBD18B2RXH4 712 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 GCOM1H8Y6P7 765 aaPredicted RBP11.02□□□□□ -0.65
CUX1-216ENST00000558469 MEIS2O14770 477 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 ECM2O94769 699 aaPredicted RBP11.02□□□□□ -0.65
CUX1-216ENST00000558469 POLR2MP0CAP2 368 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 HOXA13P31271 388 aaPredicted RBP11.02□□□□□ -0.65
CUX1-216ENST00000558469 DDIT3P35638 169 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 MAP2K1Q02750 393 aaPredicted RBP11.02□□□□□ -0.65
CUX1-216ENST00000558469 PKP1Q13835 747 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 NPY5RQ15761 445 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 FOXD4L5Q5VV16 416 aaPredicted RBP11.02□□□□□ -0.65
CUX1-216ENST00000558469 GALNT17Q6IS24 598 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 USP17L6PQ6QN14 398 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 NSMFQ6X4W1 530 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 DIS3L2Q8IYB7 885 aaKnown RBP11.02□□□□□ -0.65
CUX1-216ENST00000558469 ANKRD35Q8N283 1001 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 DAGLBQ8NCG7 672 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 RGS22Q8NE09 1264 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 SHCBP1Q8NEM2 672 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 BICD2Q8TD16 824 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 OXER1Q8TDS5 423 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 FOXD4L4Q8WXT5 416 aaPredicted RBP11.02□□□□□ -0.65
CUX1-216ENST00000558469 BEGAINQ9BUH8 593 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 CFHR5Q9BXR6 569 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 GLT8D2Q9H1C3 349 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 BIN2Q9UBW5 565 aaPredicted RBP11.02□□□□□ -0.65
CUX1-216ENST00000558469 FBXO40Q9UH90 709 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 MTMR6Q9Y217 621 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 MCM3APO60318 1980 aa11.02□□□□□ -0.65
CUX1-216ENST00000558469 KIAA1217Q5T5P2 1943 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 FCER1AP12319 257 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 PDIA4P13667 645 aaKnown RBP11.01□□□□□ -0.65
CUX1-216ENST00000558469 MAPK4P31152 587 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 HSD17B4P51659 736 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 NR5A1Q13285 461 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 JAKMIP3Q5VZ66 844 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 RNF207Q6ZRF8 634 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 FERMT3Q86UX7 667 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 REXO1Q8N1G1 1221 aaKnown RBP11.01□□□□□ -0.65
CUX1-216ENST00000558469 RASGRP4Q8TDF6 673 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 MMP19Q99542 508 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 A1CFQ9NQ94 594 aaKnown RBP11.01□□□□□ -0.65
CUX1-216ENST00000558469 TMEM260Q9NX78 707 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 SAGE1Q9NXZ1 904 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 PCDHA6Q9UN73 950 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 PCDHA8Q9Y5H6 950 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 CEP350Q5VT06 3117 aa11.01□□□□□ -0.65
CUX1-216ENST00000558469 ZNF236Q9UL36 1845 aa11□□□□□ -0.65
CUX1-216ENST00000558469 KIF28PB7ZC32 967 aa11□□□□□ -0.65
CUX1-216ENST00000558469 M0R2N6 131 aa11□□□□□ -0.65
CUX1-216ENST00000558469 PIK3CDO00329 1044 aa11□□□□□ -0.65
CUX1-216ENST00000558469 ZSCAN22P10073 491 aaPredicted RBP11□□□□□ -0.65
CUX1-216ENST00000558469 CLK2P49760 499 aaKnown RBP11□□□□□ -0.65
CUX1-216ENST00000558469 RPS6P62753 249 aaKnown RBP11□□□□□ -0.65
CUX1-216ENST00000558469 BAATQ14032 418 aaPredicted RBP11□□□□□ -0.65
CUX1-216ENST00000558469 KCTD2Q14681 263 aa11□□□□□ -0.65
CUX1-216ENST00000558469 NOM1Q5C9Z4 860 aaKnown RBP11□□□□□ -0.65
CUX1-216ENST00000558469 SLC30A10Q6XR72 485 aa11□□□□□ -0.65
CUX1-216ENST00000558469 GPR142Q7Z601 462 aa11□□□□□ -0.65
CUX1-216ENST00000558469 PLEKHH3Q7Z736 793 aa11□□□□□ -0.65
CUX1-216ENST00000558469 FCHSD1Q86WN1 690 aa11□□□□□ -0.65
CUX1-216ENST00000558469 SAMD3Q8N6K7 520 aa11□□□□□ -0.65
CUX1-216ENST00000558469 PGBD1Q96JS3 809 aa11□□□□□ -0.65
CUX1-216ENST00000558469 FOXP1Q9H334 677 aaPredicted RBP11□□□□□ -0.65
CUX1-216ENST00000558469 MAP3K20Q9NYL2 800 aaKnown RBP11□□□□□ -0.65
CUX1-216ENST00000558469 CYP39A1Q9NYL5 469 aa11□□□□□ -0.65
CUX1-216ENST00000558469 ZDHHC9Q9Y397 364 aa11□□□□□ -0.65
CUX1-216ENST00000558469 IVNS1ABPQ9Y6Y0 642 aa11□□□□□ -0.65
CUX1-216ENST00000558469 PFASO15067 1338 aa11□□□□□ -0.65
CUX1-216ENST00000558469 CCDC194A0A1B0GVG4 234 aa10.99□□□□□ -0.65
CUX1-216ENST00000558469 SPDYE3A6NKU9 549 aa10.99□□□□□ -0.65
CUX1-216ENST00000558469 GPR25O00155 361 aa10.99□□□□□ -0.65
CUX1-216ENST00000558469 STRNO43815 780 aa10.99□□□□□ -0.65
CUX1-216ENST00000558469 BRD1O95696 1058 aa10.99□□□□□ -0.65
CUX1-216ENST00000558469 PGK2P07205 417 aa10.99□□□□□ -0.65
CUX1-216ENST00000558469 U2AF2P26368 475 aaKnown RBP eCLIP10.99□□□□□ -0.652e-7■■■■■ 32.4
CUX1-216ENST00000558469 NUBP1P53384 320 aa10.99□□□□□ -0.65
CUX1-216ENST00000558469 NUCB2P80303 420 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms