RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PSMA7O14818 248 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 AKR1B10O60218 316 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 PPFIA4O75335 1185 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 FAM153BP0C7A2 387 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 RASSF7Q02833 373 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 TXNRD1Q16881 649 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 FAM153CQ494X1 144 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 RRAGAQ7L523 313 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 ANKRD18AQ8IVF6 992 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 FAM153AQ9UHL3 310 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 RTL9Q8NET4 1388 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 FTCDO95954 541 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 CORO7P57737 925 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 GUCY1A3Q02108 690 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 CACNB1Q02641 598 aaPredicted RBP13.75□□□□□ -0.21
LDLR-205ENST00000557933 SPAG1Q07617 926 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 TDRD12Q587J7 1177 aaKnown RBP13.75□□□□□ -0.21
LDLR-205ENST00000557933 CCDC181Q5TID7 509 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 ELOA2Q8IYF1 753 aaPredicted RBP13.75□□□□□ -0.21
LDLR-205ENST00000557933 ZNF507Q8TCN5 953 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 GPR101Q96P66 508 aaPredicted RBP13.75□□□□□ -0.21
LDLR-205ENST00000557933 EXOC1Q9NV70 894 aa13.75□□□□□ -0.21
LDLR-205ENST00000557933 SAP30BPQ9UHR5 308 aaKnown RBP13.75□□□□□ -0.21
LDLR-205ENST00000557933 EIF4A3P38919 411 aaKnown RBP13.74□□□□□ -0.21
LDLR-205ENST00000557933 SLC35G1Q2M3R5 365 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 ICE2Q659A1 982 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 BLIDQ8IZY5 108 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 ZNF512BQ96KM6 892 aaPredicted RBP13.74□□□□□ -0.21
LDLR-205ENST00000557933 DNAJC7Q99615 494 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 RBM12Q9NTZ6 932 aaKnown RBP13.74□□□□□ -0.21
LDLR-205ENST00000557933 ARHGAP20Q9P2F6 1191 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 FAM169AQ9Y6X4 670 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 LOC102724159A0A0B4J2E5 919 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 KLRC4O43908 158 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 HPDP32754 393 aaPredicted RBP13.74□□□□□ -0.21
LDLR-205ENST00000557933 TFAP4Q01664 338 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 PWP2Q15269 919 aaKnown RBP13.74□□□□□ -0.21
LDLR-205ENST00000557933 TTI2Q6NXR4 508 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 CREG2Q8IUH2 290 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 CAPN11Q9UMQ6 739 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 NFU1Q9UMS0 254 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 NUP98P52948 1817 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 H7C1D1 291 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 MYO1FO00160 1098 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 CCNT1O60563 726 aaKnown RBP13.74□□□□□ -0.21
LDLR-205ENST00000557933 ATP2C2O75185 946 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 GNAT2P19087 354 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 SEC24CP53992 1094 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 SPA17Q15506 151 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 CAPS2Q9BXY5 557 aa13.74□□□□□ -0.21
LDLR-205ENST00000557933 QTRT2Q9H974 415 aaKnown RBP13.74□□□□□ -0.21
LDLR-205ENST00000557933 MYH6P13533 1939 aa13.73□□□□□ -0.21
LDLR-205ENST00000557933 SSBP05455 408 aaKnown RBP eCLIP13.73□□□□□ -0.21
LDLR-205ENST00000557933 CYLC1P35663 651 aaPredicted RBP13.73□□□□□ -0.21
LDLR-205ENST00000557933 IL6STP40189 918 aaPredicted RBP13.73□□□□□ -0.21
LDLR-205ENST00000557933 CARSP49589 748 aaKnown RBP13.73□□□□□ -0.21
LDLR-205ENST00000557933 TTMPQ5BVD1 217 aa13.73□□□□□ -0.21
LDLR-205ENST00000557933 SPATA4Q8NEY3 305 aa13.73□□□□□ -0.21
LDLR-205ENST00000557933 PNPLA7Q6ZV29 1317 aa13.73□□□□□ -0.21
LDLR-205ENST00000557933 TXKP42681 527 aa13.73□□□□□ -0.21
LDLR-205ENST00000557933 MECOMQ03112 1051 aa13.73□□□□□ -0.21
LDLR-205ENST00000557933 PAPD7Q5XG87 772 aaKnown RBP13.73□□□□□ -0.21
LDLR-205ENST00000557933 TADA2BQ86TJ2 420 aa13.73□□□□□ -0.21
LDLR-205ENST00000557933 TXNRD3Q86VQ6 643 aa13.73□□□□□ -0.21
LDLR-205ENST00000557933 OR2W6PQ8NHA6 318 aa13.73□□□□□ -0.21
LDLR-205ENST00000557933 CELF1Q92879 486 aaKnown RBP13.73□□□□□ -0.21
LDLR-205ENST00000557933 SPEF2Q9C093 1822 aa13.73□□□□□ -0.21
LDLR-205ENST00000557933 CNTNAP4Q9C0A0 1308 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 COL4A1P02462 1669 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 LRRC53A6NM62 1247 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 SEMA3EO15041 775 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 FECHP22830 423 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 SLC1A4P43007 532 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 KRT83P78385 493 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 DIXDC1Q155Q3 683 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 C4orf32Q8N8J7 132 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 MTMR8Q96EF0 704 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 RUFY1Q96T51 708 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 TNS1Q9HBL0 1735 aaKnown RBP13.72□□□□□ -0.21
LDLR-205ENST00000557933 COL1A1P02452 1464 aaPredicted RBP13.72□□□□□ -0.21
LDLR-205ENST00000557933 MYH14Q7Z406 1995 aaKnown RBP13.72□□□□□ -0.21
LDLR-205ENST00000557933 CYTH3O43739 400 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 GLI1P08151 1106 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 KIF11P52732 1056 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 TICAM2Q86XR7 235 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 KLHL7Q8IXQ5 586 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 SEPT12Q8IYM1 358 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 PNMA1Q8ND90 353 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 DCP1AQ9NPI6 582 aaPredicted RBP13.72□□□□□ -0.21
LDLR-205ENST00000557933 TMEM260Q9NX78 707 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 MYO1AQ9UBC5 1043 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 PDS5AQ29RF7 1337 aaKnown RBP13.72□□□□□ -0.21
LDLR-205ENST00000557933 COL24A1Q17RW2 1714 aa13.72□□□□□ -0.21
LDLR-205ENST00000557933 ERVV-1B6SEH8 477 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 NDUFAB1O14561 156 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 ERLIN2O94905 339 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 ATP6V1AP38606 617 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 MNAT1P51948 309 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 EIF6P56537 245 aaKnown RBP13.71□□□□□ -0.21
LDLR-205ENST00000557933 IRX3P78415 501 aaPredicted RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms