RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 ADD3Q9UEY8 706 aaKnown RBP14.99□□□□□ -0.01
SHMT2-223ENST00000556689 MCM3APO60318 1980 aa14.98□□□□□ -0.01
SHMT2-223ENST00000556689 MYO9BQ13459 2157 aa14.98□□□□□ -0.01
SHMT2-223ENST00000556689 GTPBP6O43824 516 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-223ENST00000556689 ICAM1P05362 532 aa14.98□□□□□ -0.01
SHMT2-223ENST00000556689 ACTN1P12814 892 aa14.98□□□□□ -0.01
SHMT2-223ENST00000556689 POU3F3P20264 500 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-223ENST00000556689 CPT1AP50416 773 aa14.98□□□□□ -0.01
SHMT2-223ENST00000556689 DEFB128Q7Z7B8 93 aa14.98□□□□□ -0.01
SHMT2-223ENST00000556689 RCAN3Q9UKA8 241 aa14.98□□□□□ -0.01
SHMT2-223ENST00000556689 MTMR7Q9Y216 660 aa14.98□□□□□ -0.01
SHMT2-223ENST00000556689 MYH7P12883 1935 aa14.98□□□□□ -0.01
SHMT2-223ENST00000556689 TNKSO95271 1327 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 LOC102724159A0A0B4J2E5 919 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 RFXAPO00287 272 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 ERC2O15083 957 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 MYL3P08590 195 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 PURAQ00577 322 aaKnown RBP14.97□□□□□ -0.01
SHMT2-223ENST00000556689 TFF2Q03403 129 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 PWP2Q15269 919 aaKnown RBP14.97□□□□□ -0.01
SHMT2-223ENST00000556689 BRDTQ58F21 947 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-223ENST00000556689 C20orf194Q5TEA3 1177 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 PHOSPHO2Q8TCD6 241 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 DCAF4Q8WV16 495 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 NECAB3Q96P71 396 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-223ENST00000556689 MTG1Q9BT17 334 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-223ENST00000556689 C1QTNF1Q9BXJ1 281 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 INCENPQ9NQS7 918 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 MTCH2Q9Y6C9 303 aa14.97□□□□□ -0.01
SHMT2-223ENST00000556689 MYH4Q9Y623 1939 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 RBM47A0AV96 593 aaKnown RBP14.96□□□□□ -0.01
SHMT2-223ENST00000556689 RANBP6O60518 1105 aaKnown RBP14.96□□□□□ -0.01
SHMT2-223ENST00000556689 NMT2O60551 498 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 CA3P07451 260 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 RFC2P35250 354 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 ALDH5A1P51649 535 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-223ENST00000556689 CTDSPL2Q05D32 466 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 CCDC96Q2M329 555 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 FAM47CQ5HY64 1035 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 ZMYM1Q5SVZ6 1142 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 RETREG2Q8NC44 543 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 OR6J1Q8NGC5 347 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 FAM122AQ96E09 287 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 FSD1Q9BTV5 496 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 RANBP17Q9H2T7 1088 aaKnown RBP14.96□□□□□ -0.01
SHMT2-223ENST00000556689 CERS4Q9HA82 394 aa14.96□□□□□ -0.01
SHMT2-223ENST00000556689 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.96□□□□□ -0.01
SHMT2-223ENST00000556689 TTC41PQ6P2S7 1318 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 PTPDC1A2A3K4 754 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 KIF28PB7ZC32 967 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 KPNA6O60684 536 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 IQCF3P0C7M6 154 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 SLC16A2P36021 539 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 PLA2G5P39877 138 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 NOVP48745 357 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 NBPF20Q3BBV1 942 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 TTBK2Q6IQ55 1244 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 BTNL9Q6UXG8 535 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 SLC9A7Q96T83 725 aa14.95□□□□□ -0.02
SHMT2-223ENST00000556689 FTOQ9C0B1 505 aaKnown RBP eCLIP14.95□□□□□ -0.02
SHMT2-223ENST00000556689 NFIBO00712 420 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 NKRFO15226 690 aaKnown RBP eCLIP14.94□□□□□ -0.02
SHMT2-223ENST00000556689 KCNQ1P51787 676 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 SYDE2Q5VT97 1194 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 NFRKBQ6P4R8 1299 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 RASGRP2Q7LDG7 609 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 PI4K2BQ8TCG2 481 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 ARNTL2Q8WYA1 636 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 MPHOSPH6Q99547 160 aaKnown RBP14.94□□□□□ -0.02
SHMT2-223ENST00000556689 ANAPC4Q9UJX5 808 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 PNMA2Q9UL42 364 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 COG5Q9UP83 839 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 REV3LO60673 3130 aa14.94□□□□□ -0.02
SHMT2-223ENST00000556689 RAD50Q92878 1312 aa14.93□□□□□ -0.02
SHMT2-223ENST00000556689 PITPNM1O00562 1244 aa14.93□□□□□ -0.02
SHMT2-223ENST00000556689 CALML3P27482 149 aa14.93□□□□□ -0.02
SHMT2-223ENST00000556689 TAP1Q03518 808 aa14.93□□□□□ -0.02
SHMT2-223ENST00000556689 PTPN11Q06124 597 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-223ENST00000556689 PDE4DQ08499 809 aa14.93□□□□□ -0.02
SHMT2-223ENST00000556689 BFSP2Q13515 415 aa14.93□□□□□ -0.02
SHMT2-223ENST00000556689 EPOPA6NHQ4 379 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 A6NJR5 290 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 B4DLN1 442 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 FOXP2O15409 715 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 ORC4O43929 436 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 TOP1P11387 765 aaKnown RBP14.92□□□□□ -0.02
SHMT2-223ENST00000556689 MRPL12P52815 198 aaKnown RBP14.92□□□□□ -0.02
SHMT2-223ENST00000556689 PPP2R5BQ15173 497 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 RNF207Q6ZRF8 634 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 HERC6Q8IVU3 1022 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 SCFD2Q8WU76 684 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 CLEC4DQ8WXI8 215 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 GPCPD1Q9NPB8 672 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 TOMM22Q9NS69 142 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 NOD1Q9Y239 953 aa14.92□□□□□ -0.02
SHMT2-223ENST00000556689 FRMPD2Q68DX3 1309 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-223ENST00000556689 TLL1O43897 1013 aa14.91□□□□□ -0.02
SHMT2-223ENST00000556689 FGRP09769 529 aa14.91□□□□□ -0.02
SHMT2-223ENST00000556689 TXNP10599 105 aaKnown RBP14.91□□□□□ -0.02
SHMT2-223ENST00000556689 RPS6P62753 249 aaKnown RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms