RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 MB21D1Q8N884 522 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 NUP133Q8WUM0 1156 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 SDR42E1Q8WUS8 393 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 TOX2Q96NM4 488 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 CHMP4BQ9H444 224 aaKnown RBP12.03□□□□□ -0.48
SCFD1-220ENST00000556486 ATP8A2Q9NTI2 1148 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 CNPY2Q9Y2B0 182 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 FAM86C2PA6NEL3 165 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 TRIM6-TRIM34B2RNG4 842 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 ASGR1P07306 291 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 IFIT2P09913 472 aaKnown RBP12.02□□□□□ -0.49
SCFD1-220ENST00000556486 BMP1P13497 986 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 ADD2P35612 726 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 ICA1Q05084 483 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 RASIP1Q5U651 963 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 KRT40Q6A162 431 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 OTOP2Q7RTS6 562 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 PACS2Q86VP3 889 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 LCORLQ8N3X6 602 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 TMEM199Q8N511 208 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 HAUS7Q99871 368 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 LRFN3Q9BTN0 628 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 CERS4Q9HA82 394 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 SLC28A3Q9HAS3 691 aa12.02□□□□□ -0.49
SCFD1-220ENST00000556486 LRRC37A2A6NM11 1700 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 CYP2D7A0A087X1C5 515 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 GPR37L1O60883 481 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 SLC25A27O95847 323 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 SNAI1O95863 264 aaPredicted RBP12.01□□□□□ -0.49
SCFD1-220ENST00000556486 PTGS1P23219 599 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 GCGRP47871 477 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 CCL23P55773 120 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 BEX3Q00994 111 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 VAC14Q08AM6 782 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 UBE3CQ15386 1083 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 SLFNL1Q499Z3 407 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 CCSAPQ6IQ19 270 aaPredicted RBP12.01□□□□□ -0.49
SCFD1-220ENST00000556486 PSRC1Q6PGN9 363 aaPredicted RBP12.01□□□□□ -0.49
SCFD1-220ENST00000556486 KLHDC9Q8NEP7 349 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 RNF166Q96A37 237 aaPredicted RBP12.01□□□□□ -0.49
SCFD1-220ENST00000556486 CCDC17Q96LX7 622 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 GLT1D1Q96MS3 346 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 C1QTNF1Q9BXJ1 281 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 VCPKMTQ9H867 229 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 PAG1Q9NWQ8 432 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 NRBP1Q9UHY1 535 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 VPS9D1Q9Y2B5 631 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 TMX2Q9Y320 296 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 ROBO3Q96MS0 1386 aa12.01□□□□□ -0.49
SCFD1-220ENST00000556486 RBAK-RBAKDNI3L0D1 243 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 STAT3P40763 770 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 RAB30Q15771 203 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 FAM83BQ5T0W9 1011 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 C12orf60Q5U649 245 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 DIEXFQ68CQ4 756 aaKnown RBP12□□□□□ -0.49
SCFD1-220ENST00000556486 RIOX2Q8IUF8 465 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 DNAJC2Q99543 621 aaKnown RBP12□□□□□ -0.49
SCFD1-220ENST00000556486 NUP88Q99567 741 aaPredicted RBP12□□□□□ -0.49
SCFD1-220ENST00000556486 TSEN34Q9BSV6 310 aaKnown RBP12□□□□□ -0.49
SCFD1-220ENST00000556486 DDX24Q9GZR7 859 aaKnown RBP eCLIP12□□□□□ -0.49
SCFD1-220ENST00000556486 SH2D4AQ9H788 454 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 ARHGEF10LQ9HCE6 1279 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 IL23AQ9NPF7 189 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 FAM184BQ9ULE4 1060 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 PCDHGC3Q9UN70 934 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 ADAMTS5Q9UNA0 930 aa12□□□□□ -0.49
SCFD1-220ENST00000556486 A0A0U1RQG5 324 aaPredicted RBP11.99□□□□□ -0.49
SCFD1-220ENST00000556486 ZBBXA8MT70 800 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 ARVCFO00192 962 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 VWA5AO00534 786 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 WDR46O15213 610 aaKnown RBP11.99□□□□□ -0.49
SCFD1-220ENST00000556486 PRKAB2O43741 272 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 FGBP02675 491 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 EEF2P13639 858 aaKnown RBP11.99□□□□□ -0.49
SCFD1-220ENST00000556486 CDK7P50613 346 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 GNASQ5JWF2 1037 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 SNRNP48Q6IEG0 339 aaKnown RBP11.99□□□□□ -0.49
SCFD1-220ENST00000556486 CCDC174Q6PII3 467 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 C16orf86Q6ZW13 317 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 FAM126BQ8IXS8 530 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 ZBED2Q9BTP6 218 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 ALG2Q9H553 416 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 ARMT1Q9H993 441 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 ZNF214Q9UL59 606 aaPredicted RBP11.99□□□□□ -0.49
SCFD1-220ENST00000556486 HCN4Q9Y3Q4 1203 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 RIPK3Q9Y572 518 aa11.99□□□□□ -0.49
SCFD1-220ENST00000556486 DDX49Q9Y6V7 483 aaKnown RBP11.99□□□□□ -0.49
SCFD1-220ENST00000556486 MROH7Q68CQ1 1323 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 SMAPO00193 183 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 MBD4O95243 580 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 CCDC144BQ3MJ40 725 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 STK11IPQ8N1F8 1099 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 REPS2Q8NFH8 660 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 HERVK_113Q902F9 699 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 DDX11Q96FC9 970 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 SCLYQ96I15 445 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 TRPV6Q9H1D0 765 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 BOLA2Q9H3K6 86 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 KANSL2Q9H9L4 492 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 PPP1R9AQ9ULJ8 1098 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms