RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 BRCA2P51587 3418 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 HMGCRP04035 888 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 PGK2P07205 417 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 RPS6KB1P23443 525 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 CAMK2BQ13554 666 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 KCTD2Q14681 263 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 MUM1L1Q5H9M0 696 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 OLFML2BQ68BL8 750 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 DPP9Q86TI2 863 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 SPRYD3Q8NCJ5 442 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 FGD4Q96M96 766 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 MYL10Q9BUA6 226 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 SLC4A5Q9BY07 1137 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 RNF146Q9NTX7 359 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 PNMA2Q9UL42 364 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 CCPG1Q9ULG6 757 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 GTF3C3Q9Y5Q9 886 aa11.24□□□□□ -0.61
SRP54-210ENST00000556380 SMCHD1A6NHR9 2005 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 CCDC69A6NI79 296 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 PPP1R11O60927 126 aaPredicted RBP11.23□□□□□ -0.61
SRP54-210ENST00000556380 ALAS1P13196 640 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 CCL5P13501 91 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 PSMA5P28066 241 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 SMARCA1P28370 1054 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 SLC4A3P48751 1232 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 RGS19P49795 217 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 EVCP57679 992 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 ANAPC15P60006 121 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 UBXN2AP68543 259 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 CACNB2Q08289 660 aaPredicted RBP11.23□□□□□ -0.61
SRP54-210ENST00000556380 CDC37Q16543 378 aaPredicted RBP11.23□□□□□ -0.61
SRP54-210ENST00000556380 QRICH1Q2TAL8 776 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 BLOC1S2Q6QNY1 142 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 SRBD1Q8N5C6 995 aaKnown RBP11.23□□□□□ -0.61
SRP54-210ENST00000556380 FAM133AQ8N9E0 248 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 FANCBQ8NB91 859 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 NUP133Q8WUM0 1156 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 MAML3Q96JK9 1138 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 UNC93B1Q9H1C4 597 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 ACAD9Q9H845 621 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 VAT1LQ9HCJ6 419 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 A1CFQ9NQ94 594 aaKnown RBP11.23□□□□□ -0.61
SRP54-210ENST00000556380 PAK6Q9NQU5 681 aaPredicted RBP11.23□□□□□ -0.61
SRP54-210ENST00000556380 HOMER2Q9NSB8 354 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 FAM217BQ9NTX9 383 aaPredicted RBP11.23□□□□□ -0.61
SRP54-210ENST00000556380 BIN2Q9UBW5 565 aaPredicted RBP11.23□□□□□ -0.61
SRP54-210ENST00000556380 SLC12A7Q9Y666 1083 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 ZNF236Q9UL36 1845 aa11.23□□□□□ -0.61
SRP54-210ENST00000556380 NFIBO00712 420 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 EIF5BO60841 1220 aaKnown RBP11.22□□□□□ -0.61
SRP54-210ENST00000556380 MYCP01106 439 aaPredicted RBP11.22□□□□□ -0.61
SRP54-210ENST00000556380 GJB1P08034 283 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 CALM1P0DP23 149 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 CALM2P0DP24 149 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 CALM3P0DP25 149 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 RXRAP19793 462 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 CASTP20810 708 aaKnown RBP11.22□□□□□ -0.61
SRP54-210ENST00000556380 KIF5BP33176 963 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 CYP2C19P33261 490 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 GNAQP50148 359 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 SOX10P56693 466 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 FUT2Q10981 343 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 APOA5Q6Q788 366 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 NFXL1Q6ZNB6 911 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 Q6ZUG5 572 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 RUFY3Q7L099 469 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 RPTORQ8N122 1335 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 ANKRD35Q8N283 1001 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 RGS22Q8NE09 1264 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 TRPV1Q8NER1 839 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 SPZ1Q9BXG8 430 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 SLC5A4Q9NY91 659 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 CYP39A1Q9NYL5 469 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 PCDHGA10Q9Y5H3 936 aa11.22□□□□□ -0.61
SRP54-210ENST00000556380 BAZ2BQ9UIF8 2168 aaKnown RBP11.21□□□□□ -0.61
SRP54-210ENST00000556380 ASTN1O14525 1302 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 SOWAHBA6NEL2 793 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 OPLAHO14841 1288 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 ZBTB5O15062 677 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 PLEKHA8P1O95397 391 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 EN2P19622 333 aaPredicted RBP11.21□□□□□ -0.61
SRP54-210ENST00000556380 RCAN1P53805 252 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 CNTN2Q02246 1040 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 MFSD14CQ5VZR4 134 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 MAMDC4Q6UXC1 1216 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 TMTC3Q6ZXV5 915 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 FBXO11Q86XK2 927 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 RAB11FIP4Q86YS3 637 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 MSL3Q8N5Y2 521 aaKnown RBP11.21□□□□□ -0.61
SRP54-210ENST00000556380 CTCFLQ8NI51 663 aaPredicted RBP11.21□□□□□ -0.61
SRP54-210ENST00000556380 TBC1D5Q92609 795 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 KCTD12Q96CX2 325 aaKnown RBP11.21□□□□□ -0.61
SRP54-210ENST00000556380 DDX11Q96FC9 970 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 PIGSQ96S52 555 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 LZTS2Q9BRK4 669 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 TINF2Q9BSI4 451 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 ZBED2Q9BTP6 218 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 RNF208Q9H0X6 261 aa11.21□□□□□ -0.61
SRP54-210ENST00000556380 ZNFX1Q9P2E3 1918 aaKnown RBP11.21□□□□□ -0.62
SRP54-210ENST00000556380 PFASO15067 1338 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms