RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 ADCY6O43306 1168 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 CALML3P27482 149 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 RPS6P62753 249 aaKnown RBP12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 SMAD3P84022 425 aaKnown RBP12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 PDE4DQ08499 809 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 IFIT1BQ5T764 474 aaKnown RBP12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 MFSD5Q6N075 450 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 EEPD1Q7L9B9 569 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 FBXO16Q8IX29 292 aaPredicted RBP12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 TMEM199Q8N511 208 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 WDR11Q9BZH6 1224 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 POLR3EQ9NVU0 708 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 MTMR10Q9NXD2 777 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 MRPL11Q9Y3B7 192 aaKnown RBP12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 FRMPD3Q5JV73 1810 aa12.71□□□□□ -0.38
VTI1BP3-201ENST00000550220 ASTN1O14525 1302 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 TNKSO95271 1327 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 ERICH2A1L162 156 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 KPNA6O60684 536 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 GOLGA8HP0CJ92 632 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 PDE4AP27815 886 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 CPT1AP50416 773 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 PPIGQ13427 754 aaKnown RBP eCLIP12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 ITGA7Q13683 1181 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 SART3Q15020 963 aaKnown RBP12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 ZNF697Q5TEC3 545 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 CXCL17Q6UXB2 119 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 ADGRF4Q8IZF3 695 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 SLC43A3Q8NBI5 491 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 SCFD2Q8WU76 684 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 UBA5Q9GZZ9 404 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 GPHNQ9NQX3 736 aaPredicted RBP12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 PDGFCQ9NRA1 345 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 MAP3K20Q9NYL2 800 aaKnown RBP12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 TBX21Q9UL17 535 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 PLXNA1Q9UIW2 1896 aa12.7□□□□□ -0.38
VTI1BP3-201ENST00000550220 TMEM265A0A087WTH1 108 aa12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 DHX16O60231 1041 aaKnown RBP12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 GSPT1P15170 499 aaKnown RBP12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 EDNRBP24530 442 aa12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 ITGB8P26012 769 aa12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 CHMLP26374 656 aa12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 BEX3Q00994 111 aa12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 TTLL4Q14679 1199 aa12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 CDC37Q16543 378 aaPredicted RBP12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 C9orf50Q5SZB4 431 aa12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 RALYLQ86SE5 291 aaKnown RBP12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 FAM126BQ8IXS8 530 aa12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 SAMD3Q8N6K7 520 aa12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 NSUN6Q8TEA1 469 aaKnown RBP12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 RNPC3Q96LT9 517 aaKnown RBP12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 IWS1Q96ST2 819 aa12.69□□□□□ -0.38
VTI1BP3-201ENST00000550220 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 CD4P01730 458 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 SUPT20HL2P0C7V6 817 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 KCNA4P22459 653 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 PPP2R5BQ15173 497 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 USH1GQ495M9 461 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 SLC30A10Q6XR72 485 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 Q7L0L9 218 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 FBXO11Q86XK2 927 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 SLC17A8Q8NDX2 589 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 NCOA7Q8NI08 942 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 PURBQ96QR8 312 aaKnown RBP12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 AMNQ9BXJ7 453 aa12.68□□□□□ -0.38
VTI1BP3-201ENST00000550220 KLRF2D3W0D1 207 aa12.67□□□□□ -0.38
VTI1BP3-201ENST00000550220 IRX5P78411 483 aaPredicted RBP12.67□□□□□ -0.38
VTI1BP3-201ENST00000550220 STXBP2Q15833 593 aa12.67□□□□□ -0.38
VTI1BP3-201ENST00000550220 QRICH1Q2TAL8 776 aa12.67□□□□□ -0.38
VTI1BP3-201ENST00000550220 PSRC1Q6PGN9 363 aaPredicted RBP12.67□□□□□ -0.38
VTI1BP3-201ENST00000550220 OR6J1Q8NGC5 347 aa12.67□□□□□ -0.38
VTI1BP3-201ENST00000550220 MTG1Q9BT17 334 aaPredicted RBP12.67□□□□□ -0.38
VTI1BP3-201ENST00000550220 MTIF3Q9H2K0 278 aaKnown RBP12.67□□□□□ -0.38
VTI1BP3-201ENST00000550220 JMJD4Q9H9V9 463 aa12.67□□□□□ -0.38
VTI1BP3-201ENST00000550220 VAT1LQ9HCJ6 419 aa12.67□□□□□ -0.38
VTI1BP3-201ENST00000550220 IFIT3O14879 490 aaKnown RBP12.66□□□□□ -0.38
VTI1BP3-201ENST00000550220 ZBTB5O15062 677 aa12.66□□□□□ -0.38
VTI1BP3-201ENST00000550220 SGSM2O43147 1006 aa12.66□□□□□ -0.38
VTI1BP3-201ENST00000550220 TXNP10599 105 aaKnown RBP12.66□□□□□ -0.38
VTI1BP3-201ENST00000550220 SEC23AQ15436 765 aa12.66□□□□□ -0.38
VTI1BP3-201ENST00000550220 RPUSD2Q8IZ73 545 aaKnown RBP12.66□□□□□ -0.38
VTI1BP3-201ENST00000550220 SYTL5Q8TDW5 730 aaPredicted RBP12.66□□□□□ -0.38
VTI1BP3-201ENST00000550220 MTA3Q9BTC8 594 aa12.66□□□□□ -0.38
VTI1BP3-201ENST00000550220 DNAH12Q6ZR08 3092 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 PALM3A6NDB9 673 aaPredicted RBP12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 A6NJR5 290 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 EIF3JO75822 258 aaKnown RBP12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 CYP21A2P08686 494 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 EPHB4P54760 987 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 PURAQ00577 322 aaKnown RBP12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 GHRHRQ02643 423 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 PTPN11Q06124 597 aaPredicted RBP12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 WTAPQ15007 396 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 ARHGEF16Q5VV41 709 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 NFRKBQ6P4R8 1299 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 TMTC2Q8N394 836 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 MAP4K1Q92918 833 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 MTMR8Q96EF0 704 aa12.65□□□□□ -0.38
VTI1BP3-201ENST00000550220 RMDN3Q96TC7 470 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms