RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 TMEM232C9JQI7 657 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 CCER2I3L3R5 266 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 RAB11FIP3O75154 756 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 PFKMP08237 780 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 FDX1P10109 184 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 TMEM31Q5JXX7 168 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 SLFN13Q68D06 897 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 GIMAP6Q6P9H5 292 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 FBXO16Q8IX29 292 aaPredicted RBP15.2■□□□□ 0.02
SCAF11-208ENST00000546534 RPAP2Q8IXW5 612 aaPredicted RBP15.2■□□□□ 0.02
SCAF11-208ENST00000546534 TRMT13Q9NUP7 481 aaKnown RBP15.2■□□□□ 0.02
SCAF11-208ENST00000546534 SYNPO2Q9UMS6 1093 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 Q9Y3F1 56 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 HMMRO75330 724 aa15.19■□□□□ 0.02
SCAF11-208ENST00000546534 ARHGEF15O94989 841 aa15.19■□□□□ 0.02
SCAF11-208ENST00000546534 TTLL1O95922 423 aa15.19■□□□□ 0.02
SCAF11-208ENST00000546534 SUPT20HL2P0C7V6 817 aa15.19■□□□□ 0.02
SCAF11-208ENST00000546534 TIE1P35590 1138 aa15.19■□□□□ 0.02
SCAF11-208ENST00000546534 TAP1Q03518 808 aa15.19■□□□□ 0.02
SCAF11-208ENST00000546534 ZNF444Q8N0Y2 327 aaPredicted RBP15.19■□□□□ 0.02
SCAF11-208ENST00000546534 ARNTL2Q8WYA1 636 aa15.19■□□□□ 0.02
SCAF11-208ENST00000546534 KHSRPQ92945 711 aaKnown RBP eCLIP15.19■□□□□ 0.022e-8■■■□□ 14.6
SCAF11-208ENST00000546534 TRERF1Q96PN7 1200 aa15.19■□□□□ 0.02
SCAF11-208ENST00000546534 EPB41L4AQ9HCS5 686 aaPredicted RBP15.19■□□□□ 0.02
SCAF11-208ENST00000546534 ISY1Q9ULR0 285 aaKnown RBP15.19■□□□□ 0.02
SCAF11-208ENST00000546534 TRPC6Q9Y210 931 aa15.19■□□□□ 0.02
SCAF11-208ENST00000546534 XIRP2A4UGR9 3374 aa15.19■□□□□ 0.02
SCAF11-208ENST00000546534 TNKSO95271 1327 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 ALAS1P13196 640 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 STAT2P52630 851 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 TKFCQ3LXA3 575 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 MUM1L1Q5H9M0 696 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 KIAA1211Q6ZU35 1233 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 HLA-CQ95604 372 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 OSBP2Q969R2 916 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 CHMP4CQ96CF2 233 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 C11orf16Q9NQ32 467 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 CYP39A1Q9NYL5 469 aa15.18■□□□□ 0.02
SCAF11-208ENST00000546534 SNAP25P60880 206 aa15.17■□□□□ 0.02
SCAF11-208ENST00000546534 IKQ13123 557 aaPredicted RBP15.17■□□□□ 0.02
SCAF11-208ENST00000546534 FAM160B2Q86V87 743 aa15.17■□□□□ 0.02
SCAF11-208ENST00000546534 CHURC1Q8WUH1 139 aa15.17■□□□□ 0.02
SCAF11-208ENST00000546534 STAG1Q8WVM7 1258 aa15.17■□□□□ 0.02
SCAF11-208ENST00000546534 DCBLD2Q96PD2 775 aa15.17■□□□□ 0.02
SCAF11-208ENST00000546534 PURBQ96QR8 312 aaKnown RBP15.17■□□□□ 0.02
SCAF11-208ENST00000546534 SLC9A7Q96T83 725 aa15.17■□□□□ 0.02
SCAF11-208ENST00000546534 ZNF287Q9HBT7 754 aa15.17■□□□□ 0.02
SCAF11-208ENST00000546534 LRRC37A2A6NM11 1700 aa15.17■□□□□ 0.02
SCAF11-208ENST00000546534 REV3LO60673 3130 aa15.17■□□□□ 0.02
SCAF11-208ENST00000546534 MYH4Q9Y623 1939 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 FAM86C2PA6NEL3 165 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 GPR37L1O60883 481 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 ACTN1P12814 892 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 TDO2P48775 406 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 PURAQ00577 322 aaKnown RBP15.16■□□□□ 0.02
SCAF11-208ENST00000546534 GRB10Q13322 594 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 DUSP28Q4G0W2 176 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 SPRED2Q7Z698 418 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 HERC6Q8IVU3 1022 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 NEDD1Q8NHV4 660 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 PHOSPHO2Q8TCD6 241 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 MORC4Q8TE76 937 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 GMCL1Q96IK5 515 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 VTA1Q9NP79 307 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 POLR3EQ9NVU0 708 aa15.16■□□□□ 0.02
SCAF11-208ENST00000546534 MYH7P12883 1935 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 PLIN4Q96Q06 1357 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 MYL3P08590 195 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 TSPY3P0CV98 308 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 TSPY8P0CW00 308 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 MCCP23508 829 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 SLC1A4P43007 532 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 PLCB2Q00722 1185 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 NSMFQ6X4W1 530 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 PPP1R13LQ8WUF5 828 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 APPBP2Q92624 585 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 WDR11Q9BZH6 1224 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 FTOQ9C0B1 505 aaKnown RBP eCLIP15.15■□□□□ 0.02
SCAF11-208ENST00000546534 CD320Q9NPF0 282 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 ZBTB40Q9NUA8 1239 aa15.15■□□□□ 0.02
SCAF11-208ENST00000546534 KIF28PB7ZC32 967 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 GPAA1O43292 621 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 SMARCA5O60264 1052 aaPredicted RBP15.14■□□□□ 0.01
SCAF11-208ENST00000546534 LPXNO60711 386 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 PLA2G6O60733 806 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 APPP05067 770 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 IQCF3P0C7M6 154 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 RFC2P35250 354 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 NBPF20Q3BBV1 942 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 FAM47CQ5HY64 1035 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 KCTD1Q719H9 257 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 KBTBD3Q8NAB2 608 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 RETREG2Q8NC44 543 aa15.14■□□□□ 0.01
SCAF11-208ENST00000546534 PI4K2BG5E9Z4 385 aa15.13■□□□□ 0.01
SCAF11-208ENST00000546534 RNF113AO15541 343 aaKnown RBP15.13■□□□□ 0.01
SCAF11-208ENST00000546534 GNAT2P19087 354 aa15.13■□□□□ 0.01
SCAF11-208ENST00000546534 CPT1AP50416 773 aa15.13■□□□□ 0.01
SCAF11-208ENST00000546534 TFAP4Q01664 338 aa15.13■□□□□ 0.01
SCAF11-208ENST00000546534 SCN5AQ14524 2016 aa15.13■□□□□ 0.01
SCAF11-208ENST00000546534 RCSD1Q6JBY9 416 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms