RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 PIGSQ96S52 555 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 NUP88Q99567 741 aaPredicted RBP10.93□□□□□ -0.66
YBX3-215ENST00000544504 AMNQ9BXJ7 453 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.93□□□□□ -0.66
YBX3-215ENST00000544504 RPAP3Q9H6T3 665 aaPredicted RBP10.93□□□□□ -0.66
YBX3-215ENST00000544504 HOXC10Q9NYD6 342 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 PRR12Q9ULL5 1215 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 MTMR6Q9Y217 621 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 ESYT2A0FGR8 921 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 ZBED4O75132 1171 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 FLOT1O75955 427 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 F13A1P00488 732 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 MMP1P03956 469 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 HOXA7P31268 230 aaPredicted RBP10.92□□□□□ -0.66
YBX3-215ENST00000544504 NAPAP54920 295 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 NLRP5P59047 1200 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 COG2Q14746 738 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 CDC37Q16543 378 aaPredicted RBP10.92□□□□□ -0.66
YBX3-215ENST00000544504 KIAA1755Q5JYT7 1200 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 ATL3Q6DD88 541 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 MCTP1Q6DN14 999 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 GADL1Q6ZQY3 521 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 RASGRP2Q7LDG7 609 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 FBXO11Q86XK2 927 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 MB21D1Q8N884 522 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 KIFC2Q96AC6 838 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 MAF1Q9H063 256 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 FOXP1Q9H334 677 aaPredicted RBP10.92□□□□□ -0.66
YBX3-215ENST00000544504 C11orf49Q9H6J7 331 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 C6orf50Q9HD87 102 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 PNMA3Q9UL41 463 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 PPP1R9AQ9ULJ8 1098 aa10.92□□□□□ -0.66
YBX3-215ENST00000544504 PPFIA3O75145 1194 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 KRT2P35908 639 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 MRPL12P52815 198 aaKnown RBP10.91□□□□□ -0.66
YBX3-215ENST00000544504 OAZ1P54368 228 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 IRX3P78415 501 aaPredicted RBP10.91□□□□□ -0.66
YBX3-215ENST00000544504 CSPP1Q1MSJ5 1256 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 SLC35G1Q2M3R5 365 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 QRICH1Q2TAL8 776 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 CATSPERGQ6ZRH7 1159 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 DAGLBQ8NCG7 672 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 GTF3C2Q8WUA4 911 aaPredicted RBP10.91□□□□□ -0.66
YBX3-215ENST00000544504 PIBF1Q8WXW3 757 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 COA7Q96BR5 231 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 PHF20Q9BVI0 1012 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 RANBP17Q9H2T7 1088 aaKnown RBP10.91□□□□□ -0.66
YBX3-215ENST00000544504 VPS54Q9P1Q0 977 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 AGTPBP1Q9UPW5 1226 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 SLC45A1Q9Y2W3 748 aa10.91□□□□□ -0.66
YBX3-215ENST00000544504 LOC285556D6RIA3 1793 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 ABCB11O95342 1321 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 hCG_1642624A0A1W2PR95 340 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 GOLGA6L22H0YM25 854 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 STXBP3O00186 592 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 HMGCRP04035 888 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 U2AF2P26368 475 aaKnown RBP eCLIP10.9□□□□□ -0.665e-8■■■□□ 15
YBX3-215ENST00000544504 DSG3P32926 999 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 ADCY7P51828 1080 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 FOSBP53539 338 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 GUCY1B3Q02153 619 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 WWC2Q6AWC2 1192 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 DIS3L2Q8IYB7 885 aaKnown RBP10.9□□□□□ -0.66
YBX3-215ENST00000544504 BLIDQ8IZY5 108 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 SAMD3Q8N6K7 520 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 SMCR8Q8TEV9 937 aaPredicted RBP10.9□□□□□ -0.66
YBX3-215ENST00000544504 ZNF396Q96N95 335 aaPredicted RBP10.9□□□□□ -0.66
YBX3-215ENST00000544504 AIFM3Q96NN9 605 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 ZMYND12Q9H0C1 365 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 CPVLQ9H3G5 476 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 HMX1Q9NP08 348 aaPredicted RBP10.9□□□□□ -0.66
YBX3-215ENST00000544504 PCDHA4Q9UN74 947 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 ZDHHC9Q9Y397 364 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 MRPL11Q9Y3B7 192 aaKnown RBP10.9□□□□□ -0.66
YBX3-215ENST00000544504 PCDHA1Q9Y5I3 950 aa10.9□□□□□ -0.66
YBX3-215ENST00000544504 BAZ2BQ9UIF8 2168 aaKnown RBP10.89□□□□□ -0.67
YBX3-215ENST00000544504 SMCO2A6NFE2 343 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 ICAM1P05362 532 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 PTMSP20962 102 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 COPB2P35606 906 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 RESTQ13127 1097 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 PKP1Q13835 747 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 TKFCQ3LXA3 575 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 LBX2Q6XYB7 198 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 CLEC17AQ6ZS10 378 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 NOSTRINQ8IVI9 506 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 SYMPKQ92797 1274 aaKnown RBP10.89□□□□□ -0.67
YBX3-215ENST00000544504 GPKOWQ92917 476 aaPredicted RBP eCLIP10.89□□□□□ -0.67
YBX3-215ENST00000544504 TNPO1Q92973 898 aaKnown RBP10.89□□□□□ -0.67
YBX3-215ENST00000544504 CUL5Q93034 780 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 SLC38A10Q9HBR0 1119 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 RIC8AQ9NPQ8 531 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 FBXO28Q9NVF7 368 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 CFAP45Q9UL16 551 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 OGDHLQ9ULD0 1010 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 NOL7Q9UMY1 257 aaKnown RBP10.89□□□□□ -0.67
YBX3-215ENST00000544504 KCNJ14Q9UNX9 436 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 PTPRFP10586 1907 aa10.89□□□□□ -0.67
YBX3-215ENST00000544504 ALPK3Q96L96 1907 aa10.88□□□□□ -0.67
YBX3-215ENST00000544504 CCDC194A0A1B0GVG4 234 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms