RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 ARHGAP44Q17R89 818 aa11.3□□□□□ -0.6
TOP3A-208ENST00000542570 EARS2Q5JPH6 523 aaKnown RBP11.3□□□□□ -0.6
TOP3A-208ENST00000542570 FMR1NBQ8N0W7 255 aaPredicted RBP11.3□□□□□ -0.6
TOP3A-208ENST00000542570 IL17RBQ9NRM6 502 aa11.3□□□□□ -0.6
TOP3A-208ENST00000542570 PANK4Q9NVE7 773 aa11.3□□□□□ -0.6
TOP3A-208ENST00000542570 BICDL2A1A5D9 508 aa11.3□□□□□ -0.6
TOP3A-208ENST00000542570 AKR1B15C9JRZ8 316 aaPredicted RBP11.3□□□□□ -0.6
TOP3A-208ENST00000542570 MARK3P27448 753 aa11.3□□□□□ -0.6
TOP3A-208ENST00000542570 INPP5BP32019 993 aa11.3□□□□□ -0.6
TOP3A-208ENST00000542570 SUPT20HL1Q3ZLR7 823 aa11.3□□□□□ -0.6
TOP3A-208ENST00000542570 LARP4BQ92615 738 aaKnown RBP11.3□□□□□ -0.6
TOP3A-208ENST00000542570 PCDHA6Q9UN73 950 aa11.3□□□□□ -0.6
TOP3A-208ENST00000542570 PCDHA8Q9Y5H6 950 aa11.3□□□□□ -0.6
TOP3A-208ENST00000542570 PLSCR1O15162 318 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 CETN3O15182 167 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 CNGA1P29973 690 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 MORC3Q14149 939 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 PCIF1Q9H4Z3 704 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 BARHL2Q9NY43 387 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 CHD2O14647 1828 aaKnown RBP11.29□□□□□ -0.6
TOP3A-208ENST00000542570 POTEB3A0JP26 581 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 POTECB2RU33 542 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 CLCN1P35523 988 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 POTEBQ6S5H4 581 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 CACTINQ8WUQ7 758 aaKnown RBP11.29□□□□□ -0.6
TOP3A-208ENST00000542570 CTNNBL1Q8WYA6 563 aaPredicted RBP11.29□□□□□ -0.6
TOP3A-208ENST00000542570 TAF4BQ92750 862 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 AS3MTQ9HBK9 375 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 MYOZ2Q9NPC6 264 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.29□□□□□ -0.6
TOP3A-208ENST00000542570 XRN1Q8IZH2 1706 aaKnown RBP11.29□□□□□ -0.6
TOP3A-208ENST00000542570 SHTN1A0MZ66 631 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 FAM26FQ5R3K3 315 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 RCSD1Q6JBY9 416 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 RGL1Q9NZL6 768 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.29□□□□□ -0.67e-6■■■■□ 21
TOP3A-208ENST00000542570 RIC1Q4ADV7 1423 aa11.29□□□□□ -0.6
TOP3A-208ENST00000542570 POTEFA5A3E0 1075 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 KCNJ18B7U540 433 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 POTEIP0CG38 1075 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 KCNJ12Q14500 433 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 ODR4Q5SWX8 454 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 POTEGQ6S5H5 508 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 POTEEQ6S8J3 1075 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 C16orf86Q6ZW13 317 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 ELP3Q9H9T3 547 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 ABCB11O95342 1321 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 SLIT3O75094 1523 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 LONP1P36776 959 aaKnown RBP11.28□□□□□ -0.6
TOP3A-208ENST00000542570 CDR1P51861 262 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 ZNF543Q08ER8 600 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 SBK1Q52WX2 424 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 NBPF12Q5TAG4 269 aaPredicted RBP11.28□□□□□ -0.6
TOP3A-208ENST00000542570 SNRNP48Q6IEG0 339 aaKnown RBP11.28□□□□□ -0.6
TOP3A-208ENST00000542570 RRAGAQ7L523 313 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 ADAMTSL3P82987 1691 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 B4DLN1 442 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 GTPBP6O43824 516 aaPredicted RBP11.28□□□□□ -0.6
TOP3A-208ENST00000542570 ARHGAP4P98171 946 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 LLGL1Q15334 1064 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 VPS36Q86VN1 386 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 FAM178BQ8IXR5 827 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 BANK1Q8NDB2 785 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 SLC10A4Q96EP9 437 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 AGBL1Q96MI9 1066 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 RMDN3Q96TC7 470 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 RFX7Q2KHR2 1363 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 TYW1BQ6NUM6 668 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 RUFY1Q96T51 708 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 HACL1Q9UJ83 578 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 PLEKHG2Q9H7P9 1386 aa11.28□□□□□ -0.6
TOP3A-208ENST00000542570 CBX1P83916 185 aa11.27□□□□□ -0.6
TOP3A-208ENST00000542570 DGKZQ13574 1117 aa11.27□□□□□ -0.6
TOP3A-208ENST00000542570 HHIPL2Q6UWX4 724 aa11.27□□□□□ -0.6
TOP3A-208ENST00000542570 DLK2Q6UY11 383 aa11.27□□□□□ -0.6
TOP3A-208ENST00000542570 MYOCDQ8IZQ8 938 aa11.27□□□□□ -0.6
TOP3A-208ENST00000542570 PPP1R9BQ96SB3 815 aa11.27□□□□□ -0.6
TOP3A-208ENST00000542570 GLT8D2Q9H1C3 349 aa11.27□□□□□ -0.6
TOP3A-208ENST00000542570 RABGAP1Q9Y3P9 1069 aa11.27□□□□□ -0.6
TOP3A-208ENST00000542570 PRPF6O94906 941 aaKnown RBP11.27□□□□□ -0.61
TOP3A-208ENST00000542570 CCDC175P0C221 793 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 DLATP10515 647 aaKnown RBP11.27□□□□□ -0.61
TOP3A-208ENST00000542570 AXDND1Q5T1B0 1012 aaPredicted RBP11.27□□□□□ -0.61
TOP3A-208ENST00000542570 APOBEC3HQ6NTF7 200 aaKnown RBP11.27□□□□□ -0.61
TOP3A-208ENST00000542570 TBC1D5Q92609 795 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 JMJD4Q9H9V9 463 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 FAM217BQ9NTX9 383 aaPredicted RBP11.27□□□□□ -0.61
TOP3A-208ENST00000542570 PPP4CP60510 307 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 SEC23AQ15436 765 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 KMT5BQ4FZB7 885 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 CCDC122Q5T0U0 273 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 STYK1Q6J9G0 422 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 ZNF771Q7L3S4 317 aaPredicted RBP11.27□□□□□ -0.61
TOP3A-208ENST00000542570 LDHDQ86WU2 507 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 PDCL2Q8N4E4 241 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 FRMD4BQ9Y2L6 1034 aa11.27□□□□□ -0.61
TOP3A-208ENST00000542570 LRRIQ4A6NIV6 560 aa11.26□□□□□ -0.61
TOP3A-208ENST00000542570 ADAM9Q13443 819 aa11.26□□□□□ -0.61
TOP3A-208ENST00000542570 NTRK3Q16288 839 aa11.26□□□□□ -0.61
TOP3A-208ENST00000542570 HSP90B2PQ58FF3 399 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms