RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 MRPL12P52815 198 aaKnown RBP19.69■□□□□ 0.74
LIG1-204ENST00000542460 GHRHRQ02643 423 aa19.69■□□□□ 0.74
LIG1-204ENST00000542460 BAATQ14032 418 aaPredicted RBP19.69■□□□□ 0.74
LIG1-204ENST00000542460 TBC1D5Q92609 795 aa19.69■□□□□ 0.74
LIG1-204ENST00000542460 ZMYND12Q9H0C1 365 aa19.69■□□□□ 0.74
LIG1-204ENST00000542460 C6orf50Q9HD87 102 aa19.69■□□□□ 0.74
LIG1-204ENST00000542460 GCOM1H8Y6P7 765 aaPredicted RBP19.68■□□□□ 0.74
LIG1-204ENST00000542460 POLR2MP0CAP2 368 aa19.68■□□□□ 0.74
LIG1-204ENST00000542460 GNA11P29992 359 aa19.68■□□□□ 0.74
LIG1-204ENST00000542460 HSD17B4P51659 736 aa19.68■□□□□ 0.74
LIG1-204ENST00000542460 RPS6P62753 249 aaKnown RBP19.68■□□□□ 0.74
LIG1-204ENST00000542460 DPP9Q86TI2 863 aa19.68■□□□□ 0.74
LIG1-204ENST00000542460 CUL5Q93034 780 aa19.68■□□□□ 0.74
LIG1-204ENST00000542460 RIC8AQ9NPQ8 531 aa19.68■□□□□ 0.74
LIG1-204ENST00000542460 TSHZ2Q9NRE2 1034 aa19.68■□□□□ 0.74
LIG1-204ENST00000542460 SLC5A4Q9NY91 659 aa19.68■□□□□ 0.74
LIG1-204ENST00000542460 PIK3CDO00329 1044 aa19.67■□□□□ 0.74
LIG1-204ENST00000542460 PGK2P07205 417 aa19.67■□□□□ 0.74
LIG1-204ENST00000542460 ANP32AP39687 249 aaKnown RBP19.67■□□□□ 0.74
LIG1-204ENST00000542460 ADCY7P51828 1080 aa19.67■□□□□ 0.74
LIG1-204ENST00000542460 NLRP5P59047 1200 aa19.67■□□□□ 0.74
LIG1-204ENST00000542460 MAP2K5Q13163 448 aa19.67■□□□□ 0.74
LIG1-204ENST00000542460 USP6NLQ92738 828 aa19.67■□□□□ 0.74
LIG1-204ENST00000542460 SRRDQ9UH36 339 aa19.67■□□□□ 0.74
LIG1-204ENST00000542460 DNAJC25-GNG10A0A024R161 153 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 POTEB2H3BUK9 544 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 MEIS2O14770 477 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 CALML3P27482 149 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 RGS2P41220 211 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 FLT3LGP49771 235 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 PRMT2P55345 433 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 TRIM29Q14134 588 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 GALNT17Q6IS24 598 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 SLC30A10Q6XR72 485 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 SHISA4Q96DD7 197 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 TRIM17Q9Y577 477 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 MYH6P13533 1939 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 COBLO75128 1261 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 HOXC6P09630 235 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 HOXA13P31271 388 aaPredicted RBP19.66■□□□□ 0.74
LIG1-204ENST00000542460 PRKCZQ05513 592 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 USP17L6PQ6QN14 398 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 OTOP1Q7RTM1 612 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 FAM133AQ8N9E0 248 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 BICD2Q8TD16 824 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 SYTL5Q8TDW5 730 aaPredicted RBP19.66■□□□□ 0.74
LIG1-204ENST00000542460 C8orf76Q96K31 380 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 PHF20Q9BVI0 1012 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 MCOLN1Q9GZU1 580 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 GJB4Q9NTQ9 266 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 FOXD4L1Q9NU39 408 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 GABRQQ9UN88 632 aa19.66■□□□□ 0.74
LIG1-204ENST00000542460 ZNF792Q3KQV3 632 aa19.65■□□□□ 0.74
LIG1-204ENST00000542460 KCNJ14Q9UNX9 436 aa19.65■□□□□ 0.74
LIG1-204ENST00000542460 DIS3Q9Y2L1 958 aaKnown RBP19.65■□□□□ 0.74
LIG1-204ENST00000542460 SMCHD1A6NHR9 2005 aa19.65■□□□□ 0.74
LIG1-204ENST00000542460 XRCC5P13010 732 aaKnown RBP19.64■□□□□ 0.73
LIG1-204ENST00000542460 CYP2B6P20813 491 aa19.64■□□□□ 0.73
LIG1-204ENST00000542460 CNTN2Q02246 1040 aa19.64■□□□□ 0.73
LIG1-204ENST00000542460 KRT40Q6A162 431 aa19.64■□□□□ 0.73
LIG1-204ENST00000542460 FBXO18Q8NFZ0 1043 aa19.64■□□□□ 0.73
LIG1-204ENST00000542460 APBA2Q99767 749 aa19.64■□□□□ 0.73
LIG1-204ENST00000542460 ADD3Q9UEY8 706 aaKnown RBP19.64■□□□□ 0.73
LIG1-204ENST00000542460 PCDHA4Q9UN74 947 aa19.64■□□□□ 0.73
LIG1-204ENST00000542460 RBM19Q9Y4C8 960 aaKnown RBP19.64■□□□□ 0.73
LIG1-204ENST00000542460 IRF5Q13568 498 aa19.63■□□□□ 0.73
LIG1-204ENST00000542460 UBE2SQ16763 222 aa19.63■□□□□ 0.73
LIG1-204ENST00000542460 MCTP2Q6DN12 878 aa19.63■□□□□ 0.73
LIG1-204ENST00000542460 CTU1Q7Z7A3 348 aaKnown RBP19.63■□□□□ 0.73
LIG1-204ENST00000542460 FCHSD1Q86WN1 690 aa19.63■□□□□ 0.73
LIG1-204ENST00000542460 REXO1Q8N1G1 1221 aaKnown RBP19.63■□□□□ 0.73
LIG1-204ENST00000542460 DAGLBQ8NCG7 672 aa19.63■□□□□ 0.73
LIG1-204ENST00000542460 DNERQ8NFT8 737 aa19.63■□□□□ 0.73
LIG1-204ENST00000542460 COL20A1Q9P218 1284 aa19.63■□□□□ 0.73
LIG1-204ENST00000542460 FOSP01100 380 aaPredicted RBP19.62■□□□□ 0.73
LIG1-204ENST00000542460 MMP1P03956 469 aa19.62■□□□□ 0.73
LIG1-204ENST00000542460 PDCP20941 246 aa19.62■□□□□ 0.73
LIG1-204ENST00000542460 CLK2P49760 499 aaKnown RBP19.62■□□□□ 0.73
LIG1-204ENST00000542460 FOSBP53539 338 aa19.62■□□□□ 0.73
LIG1-204ENST00000542460 NPY5RQ15761 445 aa19.62■□□□□ 0.73
LIG1-204ENST00000542460 LARP1BQ659C4 914 aaKnown RBP19.62■□□□□ 0.73
LIG1-204ENST00000542460 ZNF467Q7Z7K2 595 aaPredicted RBP19.62■□□□□ 0.73
LIG1-204ENST00000542460 BLIDQ8IZY5 108 aa19.62■□□□□ 0.73
LIG1-204ENST00000542460 NPLOC4Q8TAT6 608 aa19.62■□□□□ 0.73
LIG1-204ENST00000542460 PURBQ96QR8 312 aaKnown RBP19.62■□□□□ 0.73
LIG1-204ENST00000542460 TAAR1Q96RJ0 339 aa19.62■□□□□ 0.73
LIG1-204ENST00000542460 BRMS1Q9HCU9 246 aa19.62■□□□□ 0.73
LIG1-204ENST00000542460 BIN2Q9UBW5 565 aaPredicted RBP19.62■□□□□ 0.73
LIG1-204ENST00000542460 SOWAHBA6NEL2 793 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 CCDC85CA6NKD9 419 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 SPDYE3A6NKU9 549 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 MGAMO43451 1857 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 AP3B2Q13367 1082 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 SAFBQ15424 915 aaKnown RBP eCLIP19.61■□□□□ 0.73
LIG1-204ENST00000542460 TRMT44Q8IYL2 757 aaKnown RBP19.61■□□□□ 0.73
LIG1-204ENST00000542460 SPRYD3Q8NCJ5 442 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 RAET1EQ8TD07 263 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 NSUN6Q8TEA1 469 aaKnown RBP19.61■□□□□ 0.73
LIG1-204ENST00000542460 MAML3Q96JK9 1138 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 RMDN3Q96TC7 470 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms