RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MRPL11Q9Y3B7 192 aaKnown RBP12.13□□□□□ -0.47
VPS33A-204ENST00000540669 ASTN1O14525 1302 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 FOXN1O15353 648 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 SLC25A27O95847 323 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 HSP90AA1P07900 732 aaKnown RBP12.12□□□□□ -0.47
VPS33A-204ENST00000540669 ZSCAN22P10073 491 aaPredicted RBP12.12□□□□□ -0.47
VPS33A-204ENST00000540669 VASPP50552 380 aaPredicted RBP12.12□□□□□ -0.47
VPS33A-204ENST00000540669 ARHGEF6Q15052 776 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 USH1GQ495M9 461 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 DIS3L2Q8IYB7 885 aaKnown RBP12.12□□□□□ -0.47
VPS33A-204ENST00000540669 BLIDQ8IZY5 108 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 ABRAQ8N0Z2 381 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 SMCR8Q8TEV9 937 aaPredicted RBP12.12□□□□□ -0.47
VPS33A-204ENST00000540669 PIBF1Q8WXW3 757 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 MROH8Q9H579 483 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 ACAD9Q9H845 621 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 A1CFQ9NQ94 594 aaKnown RBP12.12□□□□□ -0.47
VPS33A-204ENST00000540669 COL20A1Q9P218 1284 aa12.12□□□□□ -0.47
VPS33A-204ENST00000540669 ISY1Q9ULR0 285 aaKnown RBP12.12□□□□□ -0.47
VPS33A-204ENST00000540669 TCHHQ07283 1943 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 KIAA1217Q5T5P2 1943 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 TRPA1O75762 1119 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 XBP1P17861 261 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 GNA11P29992 359 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 ADCY7P51828 1080 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 LBX1P52954 281 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 NR5A1Q13285 461 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 AP3B2Q13367 1082 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 EARS2Q5JPH6 523 aaKnown RBP12.11□□□□□ -0.47
VPS33A-204ENST00000540669 SLC30A10Q6XR72 485 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 CLEC17AQ6ZS10 378 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 REXO1Q8N1G1 1221 aaKnown RBP12.11□□□□□ -0.47
VPS33A-204ENST00000540669 SPRYD3Q8NCJ5 442 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 GPRC5AQ8NFJ5 357 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 USP6NLQ92738 828 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 CUL5Q93034 780 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 FBXO40Q9UH90 709 aa12.11□□□□□ -0.47
VPS33A-204ENST00000540669 MORC2Q9Y6X9 1032 aaPredicted RBP12.11□□□□□ -0.47
VPS33A-204ENST00000540669 MCM3APO60318 1980 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 FAM205CA6NFA0 338 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 SMCO2A6NFE2 343 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 BTBD18B2RXH4 712 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 F13A1P00488 732 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 HSPA8P11142 646 aaKnown RBP12.1□□□□□ -0.47
VPS33A-204ENST00000540669 ALAS1P13196 640 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 ERCC3P19447 782 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 EDNRBP24530 442 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 CTGFP29279 349 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 KRT2P35908 639 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 SREBF1P36956 1147 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 NUCB2P80303 420 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 CAP1Q01518 475 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 GUCY1B3Q02153 619 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 GRB14Q14449 540 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 MCTP2Q6DN12 878 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 BRAPQ7Z569 592 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 NOSTRINQ8IVI9 506 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 CPXCR1Q8N123 301 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 FAM133AQ8N9E0 248 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 BICD2Q8TD16 824 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 SYTL5Q8TDW5 730 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-204ENST00000540669 TBC1D5Q92609 795 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 MBOAT7Q96N66 472 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 TRERF1Q96PN7 1200 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 PAGR1Q9BTK6 254 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 PSTPIP2Q9H939 334 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 ZFYVE28Q9HCC9 887 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 C6orf50Q9HD87 102 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 RNF186Q9NXI6 227 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 CYP39A1Q9NYL5 469 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 CHMP5Q9NZZ3 219 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 PCDHA6Q9UN73 950 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 PCDHA8Q9Y5H6 950 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 PFASO15067 1338 aa12.1□□□□□ -0.47
VPS33A-204ENST00000540669 LOC102724159A0A0B4J2E5 919 aa12.09□□□□□ -0.47
VPS33A-204ENST00000540669 TOB1P50616 345 aaPredicted RBP12.09□□□□□ -0.47
VPS33A-204ENST00000540669 MRPL12P52815 198 aaKnown RBP12.09□□□□□ -0.47
VPS33A-204ENST00000540669 RPS6P62753 249 aaKnown RBP12.09□□□□□ -0.47
VPS33A-204ENST00000540669 KIF22Q14807 665 aa12.09□□□□□ -0.47
VPS33A-204ENST00000540669 PWP2Q15269 919 aaKnown RBP12.09□□□□□ -0.47
VPS33A-204ENST00000540669 UBE2SQ16763 222 aa12.09□□□□□ -0.47
VPS33A-204ENST00000540669 MORN1Q5T089 497 aa12.09□□□□□ -0.47
VPS33A-204ENST00000540669 USP17L6PQ6QN14 398 aa12.09□□□□□ -0.47
VPS33A-204ENST00000540669 ANKRD13CQ8N6S4 541 aa12.09□□□□□ -0.47
VPS33A-204ENST00000540669 RASGRP4Q8TDF6 673 aa12.09□□□□□ -0.47
VPS33A-204ENST00000540669 MORC4Q8TE76 937 aa12.09□□□□□ -0.47
VPS33A-204ENST00000540669 EFCC1Q9HA90 598 aa12.09□□□□□ -0.47
VPS33A-204ENST00000540669 CPA4Q9UI42 421 aa12.09□□□□□ -0.47
VPS33A-204ENST00000540669 VPS37CA5D8V6 355 aaPredicted RBP12.08□□□□□ -0.48
VPS33A-204ENST00000540669 WNT7AO00755 349 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 FOSP01100 380 aaPredicted RBP12.08□□□□□ -0.48
VPS33A-204ENST00000540669 HOXC6P09630 235 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 MAPK4P31152 587 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 TRAPPC10P48553 1259 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 NLRP5P59047 1200 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 CCNA1P78396 465 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 TRIM29Q14134 588 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 MYSM1Q5VVJ2 828 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 KRT25Q7Z3Z0 450 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 GPR142Q7Z601 462 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms