RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 ZFAND2BQ8WV99 257 aa10.51□□□□□ -0.73
CTNNA1-243ENST00000540387 EVI5LQ96CN4 794 aa10.51□□□□□ -0.73
CTNNA1-243ENST00000540387 L3MBTL3Q96JM7 780 aaPredicted RBP10.51□□□□□ -0.73
CTNNA1-243ENST00000540387 NEUROD6Q96NK8 337 aa10.51□□□□□ -0.73
CTNNA1-243ENST00000540387 PPANQ9NQ55 473 aaKnown RBP10.51□□□□□ -0.73
CTNNA1-243ENST00000540387 NOP53Q9NZM5 478 aaKnown RBP10.51□□□□□ -0.73
CTNNA1-243ENST00000540387 HMG20BQ9P0W2 317 aa10.51□□□□□ -0.73
CTNNA1-243ENST00000540387 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.51□□□□□ -0.73
CTNNA1-243ENST00000540387 MYH8P13535 1937 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 COL24A1Q17RW2 1714 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 DDX60Q8IY21 1712 aaKnown RBP10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 SNAP23O00161 211 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 DIAPH2O60879 1101 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 FMNL1O95466 1100 aaPredicted RBP10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 MYBL1P10243 752 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 ABL2P42684 1182 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 RPS8P62241 208 aaKnown RBP10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 FMR1Q06787 632 aaKnown RBP eCLIP10.5□□□□□ -0.737e-7■■■■□ 21.6
CTNNA1-243ENST00000540387 PPP1R7Q15435 360 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 ATL2Q8NHH9 583 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 CCHCR1Q8TD31 782 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 HVCN1Q96D96 273 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 LRRC2Q9BYS8 371 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 TMEM165Q9HC07 324 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 POLR3EQ9NVU0 708 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 BIN2Q9UBW5 565 aaPredicted RBP10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 TRIM10Q9UDY6 481 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 GUCA1BQ9UMX6 200 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 LEMD3Q9Y2U8 911 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 A0A0D9SFI3 127 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 A0A1B0GTH6 734 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 PDE2AO00408 941 aaPredicted RBP10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 PSMD14O00487 310 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 TAF5LO75529 589 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 ZBTB7AO95365 584 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 MYL1P05976 194 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 C2orf54Q08AI8 447 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 QPCTQ16769 361 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 LRRC23Q53EV4 343 aaPredicted RBP10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 RRP12Q5JTH9 1297 aaKnown RBP10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 FOXP4Q8IVH2 680 aaPredicted RBP10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 TRMT44Q8IYL2 757 aaKnown RBP10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 CCDC170Q8IYT3 715 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 CNKSR1Q969H4 720 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 NEK1Q96PY6 1258 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 DBNDD2Q9BQY9 259 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 FAM167BQ9BTA0 163 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 BRIP1Q9BX63 1249 aa10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 DBNLQ9UJU6 430 aaKnown RBP10.5□□□□□ -0.73
CTNNA1-243ENST00000540387 POLR3DP05423 398 aaPredicted RBP10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 ERVK-24P63145 666 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 RIPK1Q13546 671 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 CRY2Q49AN0 593 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 PPP1R15BQ5SWA1 713 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 PAPD7Q5XG87 772 aaKnown RBP10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 VGLL2Q8N8G2 317 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 CAGE1Q8TC20 777 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 AGAP11Q8TF27 550 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 SLC16A10Q8TF71 515 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 HDAC7Q8WUI4 952 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 SEC16BQ96JE7 1060 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 SNRKQ9NRH2 765 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 SAMSN1Q9NSI8 373 aaKnown RBP10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 ECHDC1Q9NTX5 307 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 PCDHA5Q9Y5H7 936 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 PDE8BO95263 885 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 FECHP22830 423 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 CASP14P31944 242 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 EPHB4P54760 987 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 MKRN4PQ13434 485 aaPredicted RBP10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 BYSLQ13895 437 aaKnown RBP10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 CCDC70Q6NSX1 233 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 SLC51AQ86UW1 340 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 METTL16Q86W50 562 aaKnown RBP10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 RPGRQ92834 1020 aaKnown RBP10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 CCDC97Q96F63 343 aaPredicted RBP10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 SLF1Q9BQI6 1058 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 OSBPL1AQ9BXW6 950 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 SENP2Q9HC62 589 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 DMGDHQ9UI17 866 aaKnown RBP10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 COL4A1P02462 1669 aa10.49□□□□□ -0.73
CTNNA1-243ENST00000540387 KLRG2A4D1S0 409 aaPredicted RBP10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 DPPA5A6NC42 116 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 GMNCA6NCL1 334 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 ZNF233A6NK53 670 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 PPIP5K2O43314 1243 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 OATP04181 439 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 CLTAP09496 248 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 GHRP10912 638 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 CD151P48509 253 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 SCNN1BP51168 640 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 ZBED6P86452 979 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 CHRNDQ07001 517 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 CUL3Q13618 768 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 KRT32Q14532 448 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 PPP4R3AQ6IN85 833 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 EMBQ6PCB8 327 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 TMTC1Q8IUR5 882 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 CCT6BQ92526 530 aa10.48□□□□□ -0.73
CTNNA1-243ENST00000540387 JAKMIP2Q96AA8 810 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms