RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 PATL2C9JE40 543 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 APPP05067 770 aa13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 MCCP23508 829 aa13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 PURAQ00577 322 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 TFAP4Q01664 338 aa13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 MUM1L1Q5H9M0 696 aa13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 RCSD1Q6JBY9 416 aa13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 HERC6Q8IVU3 1022 aa13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 RETREG2Q8NC44 543 aa13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 WDR11Q9BZH6 1224 aa13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 EPB41L4AQ9HCS5 686 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 GPHNQ9NQX3 736 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-209ENST00000539982 PITPNM1O00562 1244 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 RNF113AO15541 343 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 GPAA1O43292 621 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 ARHGEF15O94989 841 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 MYL3P08590 195 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 IQCF3P0C7M6 154 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 CPT1AP50416 773 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 PDE4BQ07343 736 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 GRB10Q13322 594 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 NSMFQ6X4W1 530 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 IFNL3Q8IZI9 196 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 KBTBD3Q8NAB2 608 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 KHSRPQ92945 711 aaKnown RBP eCLIP13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 PURBQ96QR8 312 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 MTG1Q9BT17 334 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 FTOQ9C0B1 505 aaKnown RBP eCLIP13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 ECHDC1Q9NTX5 307 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 ADD3Q9UEY8 706 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 PRR12Q9ULL5 1215 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 DDX19BQ9UMR2 479 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 PLIN4Q96Q06 1357 aa13.81□□□□□ -0.2
CLSTN3-209ENST00000539982 LOC102724159A0A0B4J2E5 919 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 RBM47A0AV96 593 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 PI4K2BG5E9Z4 385 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 LPXNO60711 386 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 ZFYP08048 801 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 SNAP25P60880 206 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 PWP2Q15269 919 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 NBPF20Q3BBV1 942 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 BRDTQ58F21 947 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 PPP4R3BQ5MIZ7 849 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 NFRKBQ6P4R8 1299 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 KCTD1Q719H9 257 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 CHMP4CQ96CF2 233 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 LRRCC1Q9C099 1032 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 C11orf16Q9NQ32 467 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 LMCD1Q9NZU5 365 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 CCPG1Q9ULG6 757 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 LRRC37A2A6NM11 1700 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 SCN5AQ14524 2016 aa13.8□□□□□ -0.2
CLSTN3-209ENST00000539982 KPNA6O60684 536 aa13.79□□□□□ -0.2
CLSTN3-209ENST00000539982 BAIAP3O94812 1187 aa13.79□□□□□ -0.2
CLSTN3-209ENST00000539982 SLC3A2P08195 630 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-209ENST00000539982 ALDH5A1P51649 535 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-209ENST00000539982 PTPN11Q06124 597 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-209ENST00000539982 BFSP2Q13515 415 aa13.79□□□□□ -0.2
CLSTN3-209ENST00000539982 BAATQ14032 418 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-209ENST00000539982 FAM47CQ5HY64 1035 aa13.79□□□□□ -0.2
CLSTN3-209ENST00000539982 NACAP1Q9BZK3 213 aa13.79□□□□□ -0.2
CLSTN3-209ENST00000539982 M0R2C6 588 aa13.78□□□□□ -0.2
CLSTN3-209ENST00000539982 SMARCA5O60264 1052 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-209ENST00000539982 ICAM1P05362 532 aa13.78□□□□□ -0.2
CLSTN3-209ENST00000539982 OR6J1Q8NGC5 347 aa13.78□□□□□ -0.2
CLSTN3-209ENST00000539982 CHMP4BQ9H444 224 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-209ENST00000539982 STX8Q9UNK0 236 aa13.78□□□□□ -0.2
CLSTN3-209ENST00000539982 FAM86C2PA6NEL3 165 aa13.77□□□□□ -0.21
CLSTN3-209ENST00000539982 A6NJR5 290 aa13.77□□□□□ -0.21
CLSTN3-209ENST00000539982 NKRFO15226 690 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLSTN3-209ENST00000539982 KCNJ6P48051 423 aa13.77□□□□□ -0.21
CLSTN3-209ENST00000539982 PPARAQ07869 468 aa13.77□□□□□ -0.21
CLSTN3-209ENST00000539982 RAD50Q92878 1312 aa13.77□□□□□ -0.21
CLSTN3-209ENST00000539982 CD320Q9NPF0 282 aa13.77□□□□□ -0.21
CLSTN3-209ENST00000539982 HNRNPUQ00839 825 aaKnown RBP eCLIP13.76□□□□□ -0.21
CLSTN3-209ENST00000539982 LRRFIP1Q32MZ4 808 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-209ENST00000539982 SPRED2Q7Z698 418 aa13.76□□□□□ -0.21
CLSTN3-209ENST00000539982 PPP1R13LQ8WUF5 828 aa13.76□□□□□ -0.21
CLSTN3-209ENST00000539982 NAPBQ9H115 298 aa13.76□□□□□ -0.21
CLSTN3-209ENST00000539982 RANBP17Q9H2T7 1088 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-209ENST00000539982 IL17RBQ9NRM6 502 aa13.76□□□□□ -0.21
CLSTN3-209ENST00000539982 NOD1Q9Y239 953 aa13.76□□□□□ -0.21
CLSTN3-209ENST00000539982 PIEZO1Q92508 2521 aa13.76□□□□□ -0.21
CLSTN3-209ENST00000539982 SCN10AQ9Y5Y9 1956 aa13.76□□□□□ -0.21
CLSTN3-209ENST00000539982 LCTP09848 1927 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 PTPDC1A2A3K4 754 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 LCHNA4D1U4 455 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 TSPY2A6NKD2 308 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 NFIBO00712 420 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 WDR5P61964 334 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 PPP2R5BQ15173 497 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 PTGISQ16647 500 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 BTNL9Q6UXG8 535 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 CCDC155Q8N6L0 562 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 SCFD2Q8WU76 684 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 GPATCH3Q96I76 525 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 MPHOSPH6Q99547 160 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 ZBED2Q9BTP6 218 aa13.75□□□□□ -0.21
CLSTN3-209ENST00000539982 TET1Q8NFU7 2136 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms