RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 PTPDC1A2A3K4 754 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 TRIM43BA6NCK2 446 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 SOX1O00570 391 aaPredicted RBP12.44□□□□□ -0.42
CD44-227ENST00000528086 MYCNP04198 464 aaPredicted RBP12.44□□□□□ -0.42
CD44-227ENST00000528086 CALML3P27482 149 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 CST5P28325 142 aaPredicted RBP12.44□□□□□ -0.42
CD44-227ENST00000528086 BEX3Q00994 111 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 EXOSC10Q01780 885 aaKnown RBP12.44□□□□□ -0.42
CD44-227ENST00000528086 GHRHRQ02643 423 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 KCNA10Q16322 511 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 TMEM67Q5HYA8 995 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 C1orf53Q5VUE5 145 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 RNF207Q6ZRF8 634 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 RGS22Q8NE09 1264 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 SYTL5Q8TDW5 730 aaPredicted RBP12.44□□□□□ -0.42
CD44-227ENST00000528086 TRIM43Q96BQ3 446 aaPredicted RBP12.44□□□□□ -0.42
CD44-227ENST00000528086 TAAR1Q96RJ0 339 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 ANO2Q9NQ90 1003 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 ASB14A6NK59 587 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 RBAK-RBAKDNI3L0D1 243 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 PRC1O43663 620 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 CDC45O75419 566 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 ACLYP53396 1101 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 TLE2Q04725 743 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 TRDNQ13061 729 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 WTAPQ15007 396 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 TSGA10IPQ3SY00 556 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 RAB11FIP4Q86YS3 637 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 TCEANC2Q96MN5 208 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 PIGSQ96S52 555 aa12.43□□□□□ -0.42
CD44-227ENST00000528086 SCN10AQ9Y5Y9 1956 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 KBTBD13C9JR72 458 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 ARIH2O95376 493 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 PLEKHA8P1O95397 391 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 ASGR1P07306 291 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 RXRAP19793 462 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 BMP8BP34820 402 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 CDK7P50613 346 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 HSD17B4P51659 736 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 TNFAIP2Q03169 654 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 KIAA1211Q6ZU35 1233 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 RALYLQ86SE5 291 aaKnown RBP12.42□□□□□ -0.42
CD44-227ENST00000528086 FBXO11Q86XK2 927 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 ZNF654Q8IZM8 581 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 CMTR1Q8N1G2 835 aaKnown RBP12.42□□□□□ -0.42
CD44-227ENST00000528086 SRBD1Q8N5C6 995 aaKnown RBP12.42□□□□□ -0.42
CD44-227ENST00000528086 COPS5Q92905 334 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 TSEN34Q9BSV6 310 aaKnown RBP12.42□□□□□ -0.42
CD44-227ENST00000528086 PDLIM7Q9NR12 457 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 MYH7BA7E2Y1 1941 aa12.42□□□□□ -0.42
CD44-227ENST00000528086 ABCB11O95342 1321 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 ZBTB5O15062 677 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 RGS20O76081 388 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 C6orf222P0C671 652 aaPredicted RBP12.41□□□□□ -0.42
CD44-227ENST00000528086 CPA1P15085 419 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 MDM2Q00987 491 aaPredicted RBP12.41□□□□□ -0.42
CD44-227ENST00000528086 IQSEC1Q6DN90 963 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 CCDC62Q6P9F0 684 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 RNF180Q86T96 592 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 IL31RAQ8NI17 732 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 MTA3Q9BTC8 594 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 VTA1Q9NP79 307 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 FAM217BQ9NTX9 383 aaPredicted RBP12.41□□□□□ -0.42
CD44-227ENST00000528086 BRPF3Q9ULD4 1205 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 ATP11BQ9Y2G3 1177 aa12.41□□□□□ -0.42
CD44-227ENST00000528086 DOCK5Q9H7D0 1870 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 LOC102724159A0A0B4J2E5 919 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 DYNC1LI2O43237 492 aaPredicted RBP12.4□□□□□ -0.42
CD44-227ENST00000528086 MCM5P33992 734 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 LIFRP42702 1097 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 EPHB4P54760 987 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 FAAP100Q0VG06 881 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 FUT2Q10981 343 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 PWP2Q15269 919 aaKnown RBP12.4□□□□□ -0.42
CD44-227ENST00000528086 DUSP28Q4G0W2 176 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 GNASQ5JWF2 1037 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 ANKRD33Q7Z3H0 272 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 TLK2Q86UE8 772 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 SGMS1Q86VZ5 419 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 SLC43A3Q8NBI5 491 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 DNERQ8NFT8 737 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 MAP3K14Q99558 947 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 AMNQ9BXJ7 453 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 PNMA2Q9UL42 364 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 PCDHA1Q9Y5I3 950 aa12.4□□□□□ -0.42
CD44-227ENST00000528086 MOXD2PA6NHM9 499 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 DDAH1O94760 285 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 HOXA13P31271 388 aaPredicted RBP12.39□□□□□ -0.43
CD44-227ENST00000528086 FSCN1Q16658 493 aaKnown RBP12.39□□□□□ -0.43
CD44-227ENST00000528086 CXCL17Q6UXB2 119 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 CATIPQ7Z7H3 387 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 HOMER1Q86YM7 354 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 PPP1R13LQ8WUF5 828 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 NUP133Q8WUM0 1156 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 PIBF1Q8WXW3 757 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 LRCH3Q96II8 777 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 ZFP91Q96JP5 570 aaPredicted RBP12.39□□□□□ -0.43
CD44-227ENST00000528086 TMEM87BQ96K49 555 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 NEK1Q96PY6 1258 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 SPZ1Q9BXG8 430 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms