RNA–Protein interactions for RNA: ENST00000523699.5

CDK16-222, Transcript of cyclin dependent kinase 16, human

TSL 5

Gene CDK16, Length 675 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK16-222	ENST00000523699	ZKSCAN3	Q9BRR0	538 aa		18.36	■□□□□ 0.53
CDK16-222	ENST00000523699	MTIF3	Q9H2K0	278 aa	Known RBP	18.36	■□□□□ 0.53
CDK16-222	ENST00000523699	PDGFC	Q9NRA1	345 aa		18.36	■□□□□ 0.53
CDK16-222	ENST00000523699	DDX49	Q9Y6V7	483 aa	Known RBP	18.36	■□□□□ 0.53
CDK16-222	ENST00000523699	LRRC37A2	A6NM11	1700 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	KDM4A	O75164	1064 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	IGHD	P01880	384 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	CPT1A	P50416	773 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	ITGA7	Q13683	1181 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	DUSP28	Q4G0W2	176 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	PNMA1	Q8ND90	353 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	PURB	Q96QR8	312 aa	Known RBP	18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	CDX2	Q99626	313 aa	Predicted RBP	18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	DSCC1	Q9BVC3	393 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	WDR11	Q9BZH6	1224 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	SEMA6B	Q9H3T3	888 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	POLR3E	Q9NVU0	708 aa		18.35	■□□□□ 0.53
CDK16-222	ENST00000523699	DHX16	O60231	1041 aa	Known RBP	18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	PPP2R5B	Q15173	497 aa		18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	USH1G	Q495M9	461 aa		18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	ASPRV1	Q53RT3	343 aa		18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	DNER	Q8NFT8	737 aa		18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	CLEC4D	Q8WXI8	215 aa		18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	18.34	■□□□□ 0.53	2e-14	■□□□□ 10.2
CDK16-222	ENST00000523699	UBAC1	Q9BSL1	405 aa		18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	KRT23	Q9C075	422 aa		18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	HIPK3	Q9H422	1215 aa		18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	CNNM2	Q9H8M5	875 aa		18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	GPHN	Q9NQX3	736 aa	Predicted RBP	18.34	■□□□□ 0.53
CDK16-222	ENST00000523699	CD4	P01730	458 aa		18.33	■□□□□ 0.52
CDK16-222	ENST00000523699	GOLGA8H	P0CJ92	632 aa		18.33	■□□□□ 0.52
CDK16-222	ENST00000523699	FOSL2	P15408	326 aa		18.33	■□□□□ 0.52
CDK16-222	ENST00000523699	CSF2RA	P15509	400 aa		18.33	■□□□□ 0.52
CDK16-222	ENST00000523699	DNAJB2	P25686	324 aa		18.33	■□□□□ 0.52
CDK16-222	ENST00000523699	RPS6	P62753	249 aa	Known RBP	18.33	■□□□□ 0.52
CDK16-222	ENST00000523699	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	18.33	■□□□□ 0.52
CDK16-222	ENST00000523699	SLC43A3	Q8NBI5	491 aa		18.33	■□□□□ 0.52
CDK16-222	ENST00000523699	OR6J1	Q8NGC5	347 aa		18.33	■□□□□ 0.52
CDK16-222	ENST00000523699	ABCB11	O95342	1321 aa		18.32	■□□□□ 0.52
CDK16-222	ENST00000523699		B4E1Z4	1266 aa		18.32	■□□□□ 0.52
CDK16-222	ENST00000523699	NKRF	O15226	690 aa	Known RBP eCLIP	18.32	■□□□□ 0.52
CDK16-222	ENST00000523699	CDC37	Q16543	378 aa	Predicted RBP	18.32	■□□□□ 0.52
CDK16-222	ENST00000523699	MAFA	Q8NHW3	353 aa	Predicted RBP	18.32	■□□□□ 0.52
CDK16-222	ENST00000523699	SCFD2	Q8WU76	684 aa		18.32	■□□□□ 0.52
CDK16-222	ENST00000523699	MAF1	Q9H063	256 aa		18.32	■□□□□ 0.52
CDK16-222	ENST00000523699	TTYH1	Q9H313	450 aa	Predicted RBP	18.32	■□□□□ 0.52
CDK16-222	ENST00000523699	TNKS	O95271	1327 aa		18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	MYL3	P08590	195 aa		18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	PARP1	P09874	1014 aa	Known RBP	18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	SUPT20HL2	P0C7V6	817 aa		18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	CYP2C18	P33260	490 aa		18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	PSMC6	P62333	389 aa		18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	MCF2L2	Q86YR7	1114 aa		18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	RGS22	Q8NE09	1264 aa		18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	MYLIP	Q8WY64	445 aa		18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	UBA5	Q9GZZ9	404 aa		18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	IL23A	Q9NPF7	189 aa		18.31	■□□□□ 0.52
CDK16-222	ENST00000523699	COL6A3	P12111	3177 aa		18.3	■□□□□ 0.52
CDK16-222	ENST00000523699	RBM47	A0AV96	593 aa	Known RBP	18.3	■□□□□ 0.52
CDK16-222	ENST00000523699	PTGS1	P23219	599 aa		18.3	■□□□□ 0.52
CDK16-222	ENST00000523699	EDNRB	P24530	442 aa		18.3	■□□□□ 0.52
CDK16-222	ENST00000523699	TMEM240	Q5SV17	173 aa		18.3	■□□□□ 0.52
CDK16-222	ENST00000523699	ENAH	Q8N8S7	591 aa	Predicted RBP	18.3	■□□□□ 0.52
CDK16-222	ENST00000523699	ANKS1A	Q92625	1134 aa		18.3	■□□□□ 0.52
CDK16-222	ENST00000523699	TIFA	Q96CG3	184 aa		18.3	■□□□□ 0.52
CDK16-222	ENST00000523699	MTG1	Q9BT17	334 aa	Predicted RBP	18.3	■□□□□ 0.52
CDK16-222	ENST00000523699	SMCHD1	A6NHR9	2005 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	B4GALT4	O60513	344 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	KPNA6	O60684	536 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	ACR	P10323	421 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	TRDN	Q13061	729 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	TTLL4	Q14679	1199 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	TMEM63B	Q5T3F8	832 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	IFIT1B	Q5T764	474 aa	Known RBP	18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	ZNF365	Q70YC5	407 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	ADGRF4	Q8IZF3	695 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	TRPV6	Q9H1D0	765 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	CPVL	Q9H3G5	476 aa		18.29	■□□□□ 0.52
CDK16-222	ENST00000523699	GRIN2D	O15399	1336 aa		18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	FGB	P02675	491 aa		18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	TXN	P10599	105 aa	Known RBP	18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	PURA	Q00577	322 aa	Known RBP	18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	RAB30	Q15771	203 aa		18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	FAM47C	Q5HY64	1035 aa		18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	FBXO11	Q86XK2	927 aa		18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	RPUSD2	Q8IZ73	545 aa	Known RBP	18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	RUFY2	Q8WXA3	655 aa		18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	NOC4L	Q9BVI4	516 aa	Known RBP	18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	ZSWIM5	Q9P217	1185 aa		18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	MRPL11	Q9Y3B7	192 aa	Known RBP	18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	LAMA4	Q16363	1823 aa		18.28	■□□□□ 0.52
CDK16-222	ENST00000523699	CCL23	P55773	120 aa		18.27	■□□□□ 0.52
CDK16-222	ENST00000523699	TTC22	Q5TAA0	569 aa		18.27	■□□□□ 0.52
CDK16-222	ENST00000523699	RASIP1	Q5U651	963 aa		18.27	■□□□□ 0.52
CDK16-222	ENST00000523699	C16orf59	Q7L2K0	433 aa		18.27	■□□□□ 0.52
CDK16-222	ENST00000523699	NSUN6	Q8TEA1	469 aa	Known RBP	18.27	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms