RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 BEX3Q00994 111 aa20.44■□□□□ 0.86
DDX41-217ENST00000515562 TRDNQ13061 729 aa20.44■□□□□ 0.86
DDX41-217ENST00000515562 CDC37Q16543 378 aaPredicted RBP20.44■□□□□ 0.86
DDX41-217ENST00000515562 USH1GQ495M9 461 aa20.44■□□□□ 0.86
DDX41-217ENST00000515562 IFIT1BQ5T764 474 aaKnown RBP20.44■□□□□ 0.86
DDX41-217ENST00000515562 DNERQ8NFT8 737 aa20.44■□□□□ 0.86
DDX41-217ENST00000515562 UBA5Q9GZZ9 404 aa20.44■□□□□ 0.86
DDX41-217ENST00000515562 PDGFCQ9NRA1 345 aa20.44■□□□□ 0.86
DDX41-217ENST00000515562 TBX21Q9UL17 535 aa20.44■□□□□ 0.86
DDX41-217ENST00000515562 U3KPZ7 1027 aaPredicted RBP20.44■□□□□ 0.86
DDX41-217ENST00000515562 B4DLN1 442 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 TLR3O15455 904 aaKnown RBP20.43■□□□□ 0.86
DDX41-217ENST00000515562 ITGB8P26012 769 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 MRPL12P52815 198 aaKnown RBP20.43■□□□□ 0.86
DDX41-217ENST00000515562 FPGSQ05932 587 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 SHHQ15465 462 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 C9orf50Q5SZB4 431 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 KIAA1211Q6ZU35 1233 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 Q7L0L9 218 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 RGS22Q8NE09 1264 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 SEZ6LQ9BYH1 1024 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 CPVLQ9H3G5 476 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 ABCB11O95342 1321 aa20.43■□□□□ 0.86
DDX41-217ENST00000515562 DYNC1LI2O43237 492 aaPredicted RBP20.42■□□□□ 0.86
DDX41-217ENST00000515562 PDE4DQ08499 809 aa20.42■□□□□ 0.86
DDX41-217ENST00000515562 DUSP28Q4G0W2 176 aa20.42■□□□□ 0.86
DDX41-217ENST00000515562 FAM109BQ6ICB4 259 aaPredicted RBP20.42■□□□□ 0.86
DDX41-217ENST00000515562 ADGRF4Q8IZF3 695 aa20.42■□□□□ 0.86
DDX41-217ENST00000515562 DHX16O60231 1041 aaKnown RBP20.41■□□□□ 0.86
DDX41-217ENST00000515562 TIMP1P01033 207 aa20.41■□□□□ 0.86
DDX41-217ENST00000515562 EDNRBP24530 442 aa20.41■□□□□ 0.86
DDX41-217ENST00000515562 CXCL17Q6UXB2 119 aa20.41■□□□□ 0.86
DDX41-217ENST00000515562 FAM126BQ8IXS8 530 aa20.41■□□□□ 0.86
DDX41-217ENST00000515562 WDR11Q9BZH6 1224 aa20.41■□□□□ 0.86
DDX41-217ENST00000515562 MTMR10Q9NXD2 777 aa20.41■□□□□ 0.86
DDX41-217ENST00000515562 MYH6P13533 1939 aa20.41■□□□□ 0.86
DDX41-217ENST00000515562 RBM47A0AV96 593 aaKnown RBP20.4■□□□□ 0.86
DDX41-217ENST00000515562 SGSM2O43147 1006 aa20.4■□□□□ 0.86
DDX41-217ENST00000515562 CYP21A2P08686 494 aa20.4■□□□□ 0.86
DDX41-217ENST00000515562 SEC23AQ15436 765 aa20.4■□□□□ 0.86
DDX41-217ENST00000515562 QRICH1Q2TAL8 776 aa20.4■□□□□ 0.86
DDX41-217ENST00000515562 SLC43A3Q8NBI5 491 aa20.4■□□□□ 0.86
DDX41-217ENST00000515562 NKRFO15226 690 aaKnown RBP eCLIP20.39■□□□□ 0.85
DDX41-217ENST00000515562 CPT1AP50416 773 aa20.39■□□□□ 0.85
DDX41-217ENST00000515562 PTH1RQ03431 593 aa20.39■□□□□ 0.85
DDX41-217ENST00000515562 PPP2R5BQ15173 497 aa20.39■□□□□ 0.85
DDX41-217ENST00000515562 RALYLQ86SE5 291 aaKnown RBP20.39■□□□□ 0.85
DDX41-217ENST00000515562 MCF2L2Q86YR7 1114 aa20.39■□□□□ 0.85
DDX41-217ENST00000515562 SCFD2Q8WU76 684 aa20.39■□□□□ 0.85
DDX41-217ENST00000515562 RNPC3Q96LT9 517 aaKnown RBP20.39■□□□□ 0.85
DDX41-217ENST00000515562 ERICH2A1L162 156 aa20.38■□□□□ 0.85
DDX41-217ENST00000515562 CD4P01730 458 aa20.38■□□□□ 0.85
DDX41-217ENST00000515562 PTGS1P23219 599 aa20.38■□□□□ 0.85
DDX41-217ENST00000515562 SMAD3P84022 425 aaKnown RBP20.38■□□□□ 0.85
DDX41-217ENST00000515562 ITGA7Q13683 1181 aa20.38■□□□□ 0.85
DDX41-217ENST00000515562 SART3Q15020 963 aaKnown RBP20.38■□□□□ 0.85
DDX41-217ENST00000515562 BRDTQ58F21 947 aaPredicted RBP20.38■□□□□ 0.85
DDX41-217ENST00000515562 MFSD5Q6N075 450 aa20.38■□□□□ 0.85
DDX41-217ENST00000515562 CYB5R4Q7L1T6 521 aa20.38■□□□□ 0.85
DDX41-217ENST00000515562 FBXO11Q86XK2 927 aa20.38■□□□□ 0.85
DDX41-217ENST00000515562 JMJD4Q9H9V9 463 aa20.38■□□□□ 0.85
DDX41-217ENST00000515562 POLR3EQ9NVU0 708 aa20.38■□□□□ 0.85
DDX41-217ENST00000515562 STXBP5LQ9Y2K9 1186 aa20.38■□□□□ 0.85
DDX41-217ENST00000515562 MRPL11Q9Y3B7 192 aaKnown RBP20.38■□□□□ 0.85
DDX41-217ENST00000515562 EPHB4P54760 987 aa20.37■□□□□ 0.85
DDX41-217ENST00000515562 PPIGQ13427 754 aaKnown RBP eCLIP20.37■□□□□ 0.851e-11■■■□□ 18.6
DDX41-217ENST00000515562 TMEM63BQ5T3F8 832 aa20.37■□□□□ 0.85
DDX41-217ENST00000515562 ZNF697Q5TEC3 545 aa20.37■□□□□ 0.85
DDX41-217ENST00000515562 OR6J1Q8NGC5 347 aa20.37■□□□□ 0.85
DDX41-217ENST00000515562 NCOA7Q8NI08 942 aa20.37■□□□□ 0.85
DDX41-217ENST00000515562 AMNQ9BXJ7 453 aa20.37■□□□□ 0.85
DDX41-217ENST00000515562 LAMA2P24043 3122 aaKnown RBP20.36■□□□□ 0.85
DDX41-217ENST00000515562 KLRF2D3W0D1 207 aa20.36■□□□□ 0.85
DDX41-217ENST00000515562 STAG2Q8N3U4 1231 aa20.36■□□□□ 0.85
DDX41-217ENST00000515562 TMEM199Q8N511 208 aa20.36■□□□□ 0.85
DDX41-217ENST00000515562 NSUN6Q8TEA1 469 aaKnown RBP20.36■□□□□ 0.85
DDX41-217ENST00000515562 VAT1LQ9HCJ6 419 aa20.36■□□□□ 0.85
DDX41-217ENST00000515562 E7EWF7 191 aa20.35■□□□□ 0.85
DDX41-217ENST00000515562 IFIT3O14879 490 aaKnown RBP20.35■□□□□ 0.85
DDX41-217ENST00000515562 TTLL4Q14679 1199 aa20.35■□□□□ 0.85
DDX41-217ENST00000515562 SYTL5Q8TDW5 730 aaPredicted RBP20.35■□□□□ 0.85
DDX41-217ENST00000515562 MAP4K1Q92918 833 aa20.35■□□□□ 0.85
DDX41-217ENST00000515562 PPP1R12CQ9BZL4 782 aa20.35■□□□□ 0.85
DDX41-217ENST00000515562 MAD2L2Q9UI95 211 aa20.35■□□□□ 0.85
DDX41-217ENST00000515562 GRIN2DO15399 1336 aa20.34■□□□□ 0.85
DDX41-217ENST00000515562 PALM3A6NDB9 673 aaPredicted RBP20.34■□□□□ 0.85
DDX41-217ENST00000515562 ZBTB5O15062 677 aa20.34■□□□□ 0.85
DDX41-217ENST00000515562 TXNP10599 105 aaKnown RBP20.34■□□□□ 0.85
DDX41-217ENST00000515562 PURAQ00577 322 aaKnown RBP20.34■□□□□ 0.85
DDX41-217ENST00000515562 TRAF1Q13077 416 aa20.34■□□□□ 0.85
DDX41-217ENST00000515562 GRM4Q14833 912 aa20.34■□□□□ 0.85
DDX41-217ENST00000515562 WTAPQ15007 396 aa20.34■□□□□ 0.85
DDX41-217ENST00000515562 MTMR8Q96EF0 704 aa20.34■□□□□ 0.85
DDX41-217ENST00000515562 IWS1Q96ST2 819 aa20.34■□□□□ 0.85
DDX41-217ENST00000515562 RMDN3Q96TC7 470 aa20.34■□□□□ 0.85
DDX41-217ENST00000515562 HIPK3Q9H422 1215 aa20.34■□□□□ 0.85
DDX41-217ENST00000515562 GPHNQ9NQX3 736 aaPredicted RBP20.34■□□□□ 0.85
DDX41-217ENST00000515562 COL6A3P12111 3177 aa20.34■□□□□ 0.85
DDX41-217ENST00000515562 KPNA6O60684 536 aa20.33■□□□□ 0.85
DDX41-217ENST00000515562 PSMC6P62333 389 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms