RNA–Protein interactions for RNA: ENST00000497440.5

SHROOM3-210, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 611 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-210ENST00000497440 NSMFQ6X4W1 530 aa12.71□□□□□ -0.37
SHROOM3-210ENST00000497440 SLC30A10Q6XR72 485 aa12.71□□□□□ -0.37
SHROOM3-210ENST00000497440 CHST3Q7LGC8 479 aa12.71□□□□□ -0.37
SHROOM3-210ENST00000497440 RALYLQ86SE5 291 aaKnown RBP12.71□□□□□ -0.37
SHROOM3-210ENST00000497440 FBXL16Q8N461 479 aa12.71□□□□□ -0.37
SHROOM3-210ENST00000497440 SYTL5Q8TDW5 730 aaPredicted RBP12.71□□□□□ -0.37
SHROOM3-210ENST00000497440 GPHNQ9NQX3 736 aaPredicted RBP12.71□□□□□ -0.37
SHROOM3-210ENST00000497440 COL20A1Q9P218 1284 aa12.71□□□□□ -0.37
SHROOM3-210ENST00000497440 RBM27Q9P2N5 1060 aaKnown RBP12.71□□□□□ -0.37
SHROOM3-210ENST00000497440 ELP1O95163 1332 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 MYADML2A6NDP7 307 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 DDAH1O94760 285 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 SMPD1P17405 629 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 ACLYP53396 1101 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 IRX5P78411 483 aaPredicted RBP12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 SART3Q15020 963 aaKnown RBP12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 TMEM63BQ5T3F8 832 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 ANKRD33Q7Z3H0 272 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 FBXO11Q86XK2 927 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 SLC43A3Q8NBI5 491 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 LENG1Q96BZ8 264 aaPredicted RBP12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 TOX2Q96NM4 488 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 AMNQ9BXJ7 453 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 ANO2Q9NQ90 1003 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 PDGFCQ9NRA1 345 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 ISY1Q9ULR0 285 aaKnown RBP12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 MRPL11Q9Y3B7 192 aaKnown RBP12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 DDX49Q9Y6V7 483 aaKnown RBP12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 COL6A3P12111 3177 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 CDH23Q9H251 3354 aa12.7□□□□□ -0.38
SHROOM3-210ENST00000497440 MYH6P13533 1939 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 A0A1W2PQ45 241 aaPredicted RBP12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 A0A1W2PQY0 241 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 ERICH2A1L162 156 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 KBTBD13C9JR72 458 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 PRC1O43663 620 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 FXR1P51114 621 aaKnown RBP eCLIP12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 TNFAIP2Q03169 654 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 KCNA10Q16322 511 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 DUSP28Q4G0W2 176 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 TMEM67Q5HYA8 995 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 CCDC62Q6P9F0 684 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 CHRDL2Q6WN34 429 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 MCF2L2Q86YR7 1114 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 ZNF654Q8IZM8 581 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 IWS1Q96ST2 819 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 SPZ1Q9BXG8 430 aa12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 ZHX1Q9UKY1 873 aaPredicted RBP12.69□□□□□ -0.38
SHROOM3-210ENST00000497440 PNMA6FA0A0J9YX94 578 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 HSPA4P34932 840 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 RTP1P59025 263 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 ADCK5Q3MIX3 580 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 CATIPQ7Z7H3 387 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 C7orf61Q8IZ16 206 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 PCSK9Q8NBP7 692 aaKnown RBP12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 NEK1Q96PY6 1258 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 TAAR1Q96RJ0 339 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 LZTS2Q9BRK4 669 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 AGXT2Q9BYV1 514 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 PPP4R2Q9NY27 417 aa12.68□□□□□ -0.38
SHROOM3-210ENST00000497440 GRIN2DO15399 1336 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 PTPDC1A2A3K4 754 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 KIAA0355O15063 1070 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 ASGR1P07306 291 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 CALML3P27482 149 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 FUT2Q10981 343 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 TRAF1Q13077 416 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 USH1GQ495M9 461 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 RNF20Q5VTR2 975 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 DHX32Q7L7V1 743 aaKnown RBP12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 NSUN6Q8TEA1 469 aaKnown RBP12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 PIGSQ96S52 555 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 VAT1LQ9HCJ6 419 aa12.67□□□□□ -0.38
SHROOM3-210ENST00000497440 FRMPD4Q14CM0 1322 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 A6NJR5 290 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 NKRFO15226 690 aaKnown RBP eCLIP12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 MAGEA10P43363 369 aaPredicted RBP12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 RCAN1P53805 252 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 ATN1P54259 1190 aaPredicted RBP12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 EVCP57679 992 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 TLE2Q04725 743 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 FAAP100Q0VG06 881 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 TRIM60Q495X7 471 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 CASC1Q6TDU7 716 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 VSIG10LQ86VR7 867 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 FBXO16Q8IX29 292 aaPredicted RBP12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 SRBD1Q8N5C6 995 aaKnown RBP12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 NUP133Q8WUM0 1156 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 FERMT2Q96AC1 680 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 SEZ6LQ9BYH1 1024 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 PDLIM7Q9NR12 457 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 ZMYND8Q9ULU4 1186 aaPredicted RBP12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 PCDHA1Q9Y5I3 950 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 A0A0C4DFX4 3053 aa12.66□□□□□ -0.38
SHROOM3-210ENST00000497440 TRIM43BA6NCK2 446 aa12.65□□□□□ -0.38
SHROOM3-210ENST00000497440 PIK3CDO00329 1044 aa12.65□□□□□ -0.38
SHROOM3-210ENST00000497440 EIF3JO75822 258 aaKnown RBP12.65□□□□□ -0.38
SHROOM3-210ENST00000497440 CABYRO75952 493 aa12.65□□□□□ -0.38
SHROOM3-210ENST00000497440 RGS20O76081 388 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms