RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 PSMD2Q13200 908 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 MTA1Q13330 715 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 BIRC3Q13489 604 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 CUL4BQ13620 913 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 CCDC57Q2TAC2 916 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 ACCSLQ4AC99 568 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 ANKRD13DQ6ZTN6 518 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 WHAMMQ8TF30 809 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 AIDAQ96BJ3 306 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 TBC1D31Q96DN5 1066 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 L3MBTL3Q96JM7 780 aaPredicted RBP10.04□□□□□ -0.8
HPS4-217ENST00000496385 SPON1Q9HCB6 807 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 SWAP70Q9UH65 585 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 SNX12Q9UMY4 172 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 NIP7Q9Y221 180 aaKnown RBP eCLIP10.04□□□□□ -0.8
HPS4-217ENST00000496385 MAP3K2Q9Y2U5 619 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 GOLGA6L10A6NI86 522 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 ZNF233A6NK53 670 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 PDE2AO00408 941 aaPredicted RBP10.04□□□□□ -0.8
HPS4-217ENST00000496385 PTGER2P43116 358 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 SEPT2Q15019 361 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 CCDC181Q5TID7 509 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 CREG2Q8IUH2 290 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 TRMT44Q8IYL2 757 aaKnown RBP10.04□□□□□ -0.8
HPS4-217ENST00000496385 SPATA4Q8NEY3 305 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 NUP133Q8WUM0 1156 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 CAPZA3Q96KX2 299 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 LRRC1Q9BTT6 524 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 CCDC8Q9H0W5 538 aaPredicted RBP10.04□□□□□ -0.8
HPS4-217ENST00000496385 PAPOLBQ9NRJ5 636 aaKnown RBP10.04□□□□□ -0.8
HPS4-217ENST00000496385 BAIAP2L1Q9UHR4 511 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 DMGDHQ9UI17 866 aaKnown RBP10.04□□□□□ -0.8
HPS4-217ENST00000496385 LEMD3Q9Y2U8 911 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 UTYO14607 1347 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 QSER1Q2KHR3 1735 aa10.04□□□□□ -0.8
HPS4-217ENST00000496385 STXBP3O00186 592 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 CPLX1O14810 134 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 IFIT3O14879 490 aaKnown RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 SRGAP2O75044 1071 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 CDKL5O76039 1030 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 C2orf54Q08AI8 447 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 IMMTQ16891 758 aaKnown RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 CACNA2D4Q7Z3S7 1137 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 RBM12BQ8IXT5 1001 aaKnown RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 KIRREL3Q8IZU9 778 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 GALNT15Q8N3T1 639 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 SH2D3CQ8N5H7 860 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 STAMBPL1Q96FJ0 436 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 TSC22D3Q99576 134 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 DNAJC7Q99615 494 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 SH2B2O14492 632 aaPredicted RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 KRT14P02533 472 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 IDEP14735 1019 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 IBSPP21815 317 aaPredicted RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 HMGB2P26583 209 aaKnown RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 OTUD7BQ6GQQ9 843 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 HIBCHQ6NVY1 386 aaPredicted RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 RUFY4Q6ZNE9 571 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 SYNE4Q8N205 404 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 CCDC63Q8NA47 563 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 MYD88Q99836 296 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 TMBIM4Q9HC24 238 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 GDF3Q9NR23 364 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 SLC5A4Q9NY91 659 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 ZFATQ9P243 1243 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 ANKIB1Q9P2G1 1089 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 B4DLN1 442 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 CNGA1P29973 690 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 PAFAH1B1P43034 410 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 LAMB3Q13751 1172 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 CDC37Q16543 378 aaPredicted RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 CWF19L2Q2TBE0 894 aaKnown RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 KCTD16Q68DU8 428 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 VPS37DQ86XT2 251 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 NLGN1Q8N2Q7 840 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 EZH1Q92800 747 aaPredicted RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 GSDMAQ96QA5 445 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 SUDS3Q9H7L9 328 aaPredicted RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 JADE2Q9NQC1 790 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 C9orf78Q9NZ63 289 aaPredicted RBP10.03□□□□□ -0.8
HPS4-217ENST00000496385 SLC12A6Q9UHW9 1150 aa10.03□□□□□ -0.8
HPS4-217ENST00000496385 NUP98P52948 1817 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 A0A1W2PQC6 194 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 N4BP3O15049 544 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 PTPREP23469 700 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 HERVK_113P62684 666 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 PPP1R7Q15435 360 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 MEA1Q16626 185 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 IFI16Q16666 785 aaKnown RBP10.02□□□□□ -0.81
HPS4-217ENST00000496385 CMPK2Q5EBM0 449 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 THEMIS2Q5TEJ8 643 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 ANKRD23Q86SG2 305 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 TRIM74Q86UV6 250 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 TRIM73Q86UV7 250 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 ANKS4BQ8N8V4 417 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 SLC16A10Q8TF71 515 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 CENPTQ96BT3 561 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 BICD1Q96G01 975 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 CCDC43Q96MW1 224 aaKnown RBP10.02□□□□□ -0.81
HPS4-217ENST00000496385 SETDB2Q96T68 719 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms