RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 PPP2R5BQ15173 497 aa20.1■□□□□ 0.81
MDC1-206ENST00000489540 RUFY3Q7L099 469 aa20.1■□□□□ 0.81
MDC1-206ENST00000489540 SRBD1Q8N5C6 995 aaKnown RBP20.1■□□□□ 0.81
MDC1-206ENST00000489540 MORC4Q8TE76 937 aa20.1■□□□□ 0.81
MDC1-206ENST00000489540 PURBQ96QR8 312 aaKnown RBP20.1■□□□□ 0.81
MDC1-206ENST00000489540 SEC63Q9UGP8 760 aaKnown RBP20.1■□□□□ 0.81
MDC1-206ENST00000489540 KLF18A0A0U1RQI7 1052 aa20.09■□□□□ 0.81
MDC1-206ENST00000489540 PLEKHA8P1O95397 391 aa20.09■□□□□ 0.81
MDC1-206ENST00000489540 MNX1P50219 401 aaPredicted RBP20.09■□□□□ 0.81
MDC1-206ENST00000489540 ALDH5A1P51649 535 aaPredicted RBP20.09■□□□□ 0.81
MDC1-206ENST00000489540 TMTC3Q6ZXV5 915 aa20.09■□□□□ 0.81
MDC1-206ENST00000489540 RAB11FIP4Q86YS3 637 aa20.09■□□□□ 0.81
MDC1-206ENST00000489540 TBC1D5Q92609 795 aa20.09■□□□□ 0.81
MDC1-206ENST00000489540 CYP46A1Q9Y6A2 500 aa20.09■□□□□ 0.81
MDC1-206ENST00000489540 ASTN1O14525 1302 aa20.09■□□□□ 0.81
MDC1-206ENST00000489540 ZNFX1Q9P2E3 1918 aaKnown RBP20.08■□□□□ 0.81
MDC1-206ENST00000489540 BRCA2P51587 3418 aa20.08■□□□□ 0.81
MDC1-206ENST00000489540 RTN1Q16799 776 aa20.08■□□□□ 0.8
MDC1-206ENST00000489540 ANO1Q5XXA6 986 aa20.08■□□□□ 0.8
MDC1-206ENST00000489540 SYTL5Q8TDW5 730 aaPredicted RBP20.08■□□□□ 0.8
MDC1-206ENST00000489540 DIS3LQ8TF46 1054 aaKnown RBP20.08■□□□□ 0.8
MDC1-206ENST00000489540 PIBF1Q8WXW3 757 aa20.08■□□□□ 0.8
MDC1-206ENST00000489540 BRF1Q92994 677 aa20.08■□□□□ 0.8
MDC1-206ENST00000489540 AGXT2Q9BYV1 514 aa20.08■□□□□ 0.8
MDC1-206ENST00000489540 KATNBL1Q9H079 304 aa20.08■□□□□ 0.8
MDC1-206ENST00000489540 C11orf49Q9H6J7 331 aa20.08■□□□□ 0.8
MDC1-206ENST00000489540 XPNPEP3Q9NQH7 507 aa20.08■□□□□ 0.8
MDC1-206ENST00000489540 CCDC196A0A1B0GTZ2 297 aa20.07■□□□□ 0.8
MDC1-206ENST00000489540 DNM1LO00429 736 aa20.07■□□□□ 0.8
MDC1-206ENST00000489540 CFBP00751 764 aa20.07■□□□□ 0.8
MDC1-206ENST00000489540 ANAPC15P60006 121 aa20.07■□□□□ 0.8
MDC1-206ENST00000489540 GHRHRQ02643 423 aa20.07■□□□□ 0.8
MDC1-206ENST00000489540 CCDC144BQ3MJ40 725 aa20.07■□□□□ 0.8
MDC1-206ENST00000489540 VTA1Q9NP79 307 aa20.07■□□□□ 0.8
MDC1-206ENST00000489540 NAP1L2Q9ULW6 460 aaPredicted RBP20.07■□□□□ 0.8
MDC1-206ENST00000489540 GOLGA8AA7E2F4 631 aa20.06■□□□□ 0.8
MDC1-206ENST00000489540 GOLGA8BA8MQT2 603 aa20.06■□□□□ 0.8
MDC1-206ENST00000489540 DUSP11O75319 330 aaKnown RBP20.06■□□□□ 0.8
MDC1-206ENST00000489540 HSD17B4P51659 736 aa20.06■□□□□ 0.8
MDC1-206ENST00000489540 APOBRQ0VD83 1088 aa20.06■□□□□ 0.8
MDC1-206ENST00000489540 IQSEC1Q6DN90 963 aa20.06■□□□□ 0.8
MDC1-206ENST00000489540 CMTR1Q8N1G2 835 aaKnown RBP20.06■□□□□ 0.8
MDC1-206ENST00000489540 CCDC82Q8N4S0 544 aa20.06■□□□□ 0.8
MDC1-206ENST00000489540 NSUN6Q8TEA1 469 aaKnown RBP20.06■□□□□ 0.8
MDC1-206ENST00000489540 GCOM1H8Y6P7 765 aaPredicted RBP20.05■□□□□ 0.8
MDC1-206ENST00000489540 OPLAHO14841 1288 aa20.05■□□□□ 0.8
MDC1-206ENST00000489540 POLR2MP0CAP2 368 aa20.05■□□□□ 0.8
MDC1-206ENST00000489540 EDNRBP24530 442 aa20.05■□□□□ 0.8
MDC1-206ENST00000489540 PDE4DQ08499 809 aa20.05■□□□□ 0.8
MDC1-206ENST00000489540 GJC2Q5T442 439 aaPredicted RBP20.05■□□□□ 0.8
MDC1-206ENST00000489540 RNF180Q86T96 592 aa20.05■□□□□ 0.8
MDC1-206ENST00000489540 DPF3Q92784 378 aa20.05■□□□□ 0.8
MDC1-206ENST00000489540 TAAR1Q96RJ0 339 aa20.05■□□□□ 0.8
MDC1-206ENST00000489540 IWS1Q96ST2 819 aa20.05■□□□□ 0.8
MDC1-206ENST00000489540 KBTBD13C9JR72 458 aa20.04■□□□□ 0.8
MDC1-206ENST00000489540 COL6A1P12109 1028 aa20.04■□□□□ 0.8
MDC1-206ENST00000489540 METAP2P50579 478 aaKnown RBP eCLIP20.04■□□□□ 0.84e-6■□□□□ 8.6
MDC1-206ENST00000489540 EVCP57679 992 aa20.04■□□□□ 0.8
MDC1-206ENST00000489540 TNFAIP2Q03169 654 aa20.04■□□□□ 0.8
MDC1-206ENST00000489540 LRRC41Q15345 812 aa20.04■□□□□ 0.8
MDC1-206ENST00000489540 RMDN3Q96TC7 470 aa20.04■□□□□ 0.8
MDC1-206ENST00000489540 SPC25Q9HBM1 224 aa20.04■□□□□ 0.8
MDC1-206ENST00000489540 MYCNP04198 464 aaPredicted RBP20.03■□□□□ 0.8
MDC1-206ENST00000489540 ARHGEF16Q5VV41 709 aa20.03■□□□□ 0.8
MDC1-206ENST00000489540 TAPT1Q6NXT6 567 aa20.03■□□□□ 0.8
MDC1-206ENST00000489540 EEPD1Q7L9B9 569 aa20.03■□□□□ 0.8
MDC1-206ENST00000489540 FBXO16Q8IX29 292 aaPredicted RBP20.03■□□□□ 0.8
MDC1-206ENST00000489540 FAM217BQ9NTX9 383 aaPredicted RBP20.03■□□□□ 0.8
MDC1-206ENST00000489540 PDRG1Q9NUG6 133 aa20.03■□□□□ 0.8
MDC1-206ENST00000489540 COL20A1Q9P218 1284 aa20.03■□□□□ 0.8
MDC1-206ENST00000489540 PGK1P00558 417 aa20.02■□□□□ 0.8
MDC1-206ENST00000489540 CDC27P30260 824 aa20.02■□□□□ 0.8
MDC1-206ENST00000489540 NOL8Q76FK4 1167 aaKnown RBP20.02■□□□□ 0.8
MDC1-206ENST00000489540 UPF3BQ9BZI7 483 aaKnown RBP20.02■□□□□ 0.8
MDC1-206ENST00000489540 DDX49Q9Y6V7 483 aaKnown RBP20.02■□□□□ 0.8
MDC1-206ENST00000489540 SMCHD1A6NHR9 2005 aa20.02■□□□□ 0.8
MDC1-206ENST00000489540 PLXNA1Q9UIW2 1896 aa20.02■□□□□ 0.79
MDC1-206ENST00000489540 ADAMTS4O75173 837 aa20.02■□□□□ 0.79
MDC1-206ENST00000489540 HOXA13P31271 388 aaPredicted RBP20.02■□□□□ 0.79
MDC1-206ENST00000489540 ADD1P35611 737 aaKnown RBP20.02■□□□□ 0.79
MDC1-206ENST00000489540 ADCYAP1R1P41586 468 aa20.02■□□□□ 0.79
MDC1-206ENST00000489540 FUT2Q10981 343 aa20.02■□□□□ 0.79
MDC1-206ENST00000489540 STXBP2Q15833 593 aa20.02■□□□□ 0.79
MDC1-206ENST00000489540 IL17RAQ96F46 866 aa20.02■□□□□ 0.79
MDC1-206ENST00000489540 TSEN34Q9BSV6 310 aaKnown RBP20.02■□□□□ 0.79
MDC1-206ENST00000489540 SENP6Q9GZR1 1112 aaPredicted RBP20.02■□□□□ 0.79
MDC1-206ENST00000489540 PDGFCQ9NRA1 345 aa20.02■□□□□ 0.79
MDC1-206ENST00000489540 Q9Y3F1 56 aa20.02■□□□□ 0.79
MDC1-206ENST00000489540 V9GY48 417 aaPredicted RBP20.02■□□□□ 0.79
MDC1-206ENST00000489540 RBM47A0AV96 593 aaKnown RBP20.01■□□□□ 0.79
MDC1-206ENST00000489540 SEC24BO95487 1268 aa20.01■□□□□ 0.79
MDC1-206ENST00000489540 PDIA3P30101 505 aaKnown RBP20.01■□□□□ 0.79
MDC1-206ENST00000489540 GJA9P57773 515 aa20.01■□□□□ 0.79
MDC1-206ENST00000489540 TOB2Q14106 344 aaPredicted RBP20.01■□□□□ 0.79
MDC1-206ENST00000489540 KLHDC9Q8NEP7 349 aa20.01■□□□□ 0.79
MDC1-206ENST00000489540 CUL5Q93034 780 aa20.01■□□□□ 0.79
MDC1-206ENST00000489540 LENG1Q96BZ8 264 aaPredicted RBP20.01■□□□□ 0.79
MDC1-206ENST00000489540 WDR11Q9BZH6 1224 aa20.01■□□□□ 0.79
MDC1-206ENST00000489540 UPF3AQ9H1J1 476 aaKnown RBP20.01■□□□□ 0.79
MDC1-206ENST00000489540 PXMP2Q9NR77 195 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms