RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 MAP3K20Q9NYL2 800 aaKnown RBP8.2□□□□□ -1.1
VPS50-218ENST00000485994 RANBP2P49792 3224 aaKnown RBP8.2□□□□□ -1.1
VPS50-218ENST00000485994 MYH6P13533 1939 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 SOWAHBA6NEL2 793 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 KBTBD13C9JR72 458 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 E7EWF7 191 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 ADAMTS4O75173 837 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 ALAS1P13196 640 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 TAL1P17542 331 aaPredicted RBP8.19□□□□□ -1.1
VPS50-218ENST00000485994 SMARCA1P28370 1054 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 SLC16A2P36021 539 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 GJA9P57773 515 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 CNTN2Q02246 1040 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 GHRHRQ02643 423 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 NECTIN1Q15223 517 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 CCDC96Q2M329 555 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 TSGA10IPQ3SY00 556 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 MUM1L1Q5H9M0 696 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 CCSAPQ6IQ19 270 aaPredicted RBP8.19□□□□□ -1.1
VPS50-218ENST00000485994 KIAA1211Q6ZU35 1233 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 ARMCX2Q7L311 632 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 RNF180Q86T96 592 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 CCDC144CPQ8IYA2 1237 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 DNERQ8NFT8 737 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 NCOA7Q8NI08 942 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 IGDCC4Q8TDY8 1250 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 CLEC4DQ8WXI8 215 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 MTMR8Q96EF0 704 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 GDF15Q99988 308 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 ZKSCAN3Q9BRR0 538 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 ESYT1Q9BSJ8 1104 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 UBAC1Q9BSL1 405 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 SEZ6LQ9BYH1 1024 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 LSG1Q9H089 658 aaKnown RBP8.19□□□□□ -1.1
VPS50-218ENST00000485994 UPF3AQ9H1J1 476 aaKnown RBP8.19□□□□□ -1.1
VPS50-218ENST00000485994 GPCPD1Q9NPB8 672 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 XPNPEP3Q9NQH7 507 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 ADD3Q9UEY8 706 aaKnown RBP8.19□□□□□ -1.1
VPS50-218ENST00000485994 CCPG1Q9ULG6 757 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 PHF24Q9UPV7 400 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 TNKSO95271 1327 aa8.19□□□□□ -1.1
VPS50-218ENST00000485994 RBM47A0AV96 593 aaKnown RBP8.18□□□□□ -1.1
VPS50-218ENST00000485994 PALM3A6NDB9 673 aaPredicted RBP8.18□□□□□ -1.1
VPS50-218ENST00000485994 MOXD2PA6NHM9 499 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 B4DLN1 442 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 STK25O00506 426 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 SLC4A3P48751 1232 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 MRPL12P52815 198 aaKnown RBP8.18□□□□□ -1.1
VPS50-218ENST00000485994 TRAF1Q13077 416 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 SART3Q15020 963 aaKnown RBP8.18□□□□□ -1.1
VPS50-218ENST00000485994 LRRC26Q2I0M4 334 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 CCDC144BQ3MJ40 725 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 GJC2Q5T442 439 aaPredicted RBP8.18□□□□□ -1.1
VPS50-218ENST00000485994 IFIT1BQ5T764 474 aaKnown RBP8.18□□□□□ -1.1
VPS50-218ENST00000485994 ERICH6BQ5W0A0 696 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 CCDC174Q6PII3 467 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 CYB5R4Q7L1T6 521 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 ADGRF4Q8IZF3 695 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 PCSK9Q8NBP7 692 aaKnown RBP8.18□□□□□ -1.1
VPS50-218ENST00000485994 TMC2Q8TDI7 906 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 TOX2Q96NM4 488 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 UBA5Q9GZZ9 404 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 RIOX1Q9H6W3 641 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 MAD2L2Q9UI95 211 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 GNEQ9Y223 722 aaKnown RBP8.18□□□□□ -1.1
VPS50-218ENST00000485994 ELP1O95163 1332 aa8.18□□□□□ -1.1
VPS50-218ENST00000485994 FRMPD2Q68DX3 1309 aaPredicted RBP8.18□□□□□ -1.1
VPS50-218ENST00000485994 ERICH2A1L162 156 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 KLRF2D3W0D1 207 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 IFIT3O14879 490 aaKnown RBP8.17□□□□□ -1.1
VPS50-218ENST00000485994 PARP1P09874 1014 aaKnown RBP8.17□□□□□ -1.1
VPS50-218ENST00000485994 EDNRBP24530 442 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 LIFRP42702 1097 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 CDK7P50613 346 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 SNAP25P60880 206 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 TROAPQ12815 778 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 BAATQ14032 418 aaPredicted RBP8.17□□□□□ -1.1
VPS50-218ENST00000485994 TAPT1Q6NXT6 567 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 RASGRP2Q7LDG7 609 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 MCF2L2Q86YR7 1114 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 MB21D2Q8IYB1 491 aaPredicted RBP8.17□□□□□ -1.1
VPS50-218ENST00000485994 NUP133Q8WUM0 1156 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 JMJD4Q9H9V9 463 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 SPC25Q9HBM1 224 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 VTA1Q9NP79 307 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 HOMER2Q9NSB8 354 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 RBM27Q9P2N5 1060 aaKnown RBP8.17□□□□□ -1.1
VPS50-218ENST00000485994 ISY1Q9ULR0 285 aaKnown RBP8.17□□□□□ -1.1
VPS50-218ENST00000485994 MRPL11Q9Y3B7 192 aaKnown RBP8.17□□□□□ -1.1
VPS50-218ENST00000485994 RBM8AQ9Y5S9 174 aaKnown RBP8.17□□□□□ -1.1
VPS50-218ENST00000485994 ABCB11O95342 1321 aa8.17□□□□□ -1.1
VPS50-218ENST00000485994 TK2O00142 265 aa8.16□□□□□ -1.1
VPS50-218ENST00000485994 NFIBO00712 420 aa8.16□□□□□ -1.1
VPS50-218ENST00000485994 ASTN1O14525 1302 aa8.16□□□□□ -1.1
VPS50-218ENST00000485994 NKRFO15226 690 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS50-218ENST00000485994 CTAGE5O15320 804 aa8.16□□□□□ -1.1
VPS50-218ENST00000485994 EPB41L2O43491 1005 aaKnown RBP8.16□□□□□ -1.1
VPS50-218ENST00000485994 CABYRO75952 493 aa8.16□□□□□ -1.1
VPS50-218ENST00000485994 LCTP09848 1927 aa8.16□□□□□ -1.1
VPS50-218ENST00000485994 GOLGA8HP0CJ92 632 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms