RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	HDAC1	Q13547	482 aa	Predicted RBP	12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	ACVR2B	Q13705	512 aa		12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	AAK1	Q2M2I8	961 aa		12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	GNAS	Q5JWF2	1037 aa		12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	MAMSTR	Q6ZN01	415 aa		12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	KCTD1	Q719H9	257 aa		12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	RASGRP2	Q7LDG7	609 aa		12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	SPC25	Q9HBM1	224 aa		12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	IL17RB	Q9NRM6	502 aa		12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	SYNGAP1	Q96PV0	1343 aa		12.52	□□□□□ -0.41
HMGN1-215	ENST00000485550	DNAJC25-GNG10	A0A024R161	153 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550		A0A0D9SFI3	127 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	ZBBX	A8MT70	800 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	TRIM6-TRIM34	B2RNG4	842 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	STAT2	P52630	851 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	GJA9	P57773	515 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	BEX3	Q00994	111 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	CCDC144B	Q3MJ40	725 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	RRP12	Q5JTH9	1297 aa	Known RBP	12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	MAMDC4	Q6UXC1	1216 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	MSL3	Q8N5Y2	521 aa	Known RBP	12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	STAG1	Q8WVM7	1258 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	RILPL2	Q969X0	211 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	AGBL1	Q96MI9	1066 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	UPF3A	Q9H1J1	476 aa	Known RBP	12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	HIPK3	Q9H422	1215 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	CERS4	Q9HA82	394 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	HELLS	Q9NRZ9	838 aa		12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	COL4A4	P53420	1690 aa	Predicted RBP	12.51	□□□□□ -0.41
HMGN1-215	ENST00000485550	FAM86C2P	A6NEL3	165 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	FGA	P02671	866 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	CNTN2	Q02246	1040 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	NMI	Q13287	307 aa	Predicted RBP	12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	MCMDC2	Q4G0Z9	681 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	TMEM31	Q5JXX7	168 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	KRT40	Q6A162	431 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	CHST13	Q8NET6	341 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	CHURC1	Q8WUH1	139 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.5	□□□□□ -0.41	1e-7	■■□□□ 13.3
HMGN1-215	ENST00000485550	FBXO40	Q9UH90	709 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	SYNPO2	Q9UMS6	1093 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	SLC4A7	Q9Y6M7	1214 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	PLIN4	Q96Q06	1357 aa		12.5	□□□□□ -0.41
HMGN1-215	ENST00000485550	LCT	P09848	1927 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	POTEM	A6NI47	508 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	CTAGE5	O15320	804 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	IGHD	P01880	384 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	ALAS1	P13196	640 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	OAZ1	P54368	228 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	HAND2	P61296	217 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	RCSD1	Q6JBY9	416 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	CXCL17	Q6UXB2	119 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	ZNF589	Q86UQ0	364 aa	Predicted RBP	12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	FAM160B2	Q86V87	743 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	EXOC6	Q8TAG9	804 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	SCLY	Q96I15	445 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	GMCL1	Q96IK5	515 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	FGD4	Q96M96	766 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	ABHD16B	Q9H3Z7	469 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	PLSCR2	Q9NRY7	297 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	RNF146	Q9NTX7	359 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	ANAPC4	Q9UJX5	808 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	ARIH1	Q9Y4X5	557 aa	Predicted RBP	12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	PCDHA11	Q9Y5I1	949 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	MTCH2	Q9Y6C9	303 aa		12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	DDX49	Q9Y6V7	483 aa	Known RBP	12.49	□□□□□ -0.41
HMGN1-215	ENST00000485550	ASTN1	O14525	1302 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	ZNF536	O15090	1300 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	EPOP	A6NHQ4	379 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	GTPBP6	O43824	516 aa	Predicted RBP	12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	HSPD1	P10809	573 aa	Known RBP	12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	PTGS1	P23219	599 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	SLC16A2	P36021	539 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	ALX1	Q15699	326 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	CCDC96	Q2M329	555 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	PPP4R3B	Q5MIZ7	849 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	TTBK2	Q6IQ55	1244 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	NOL8	Q76FK4	1167 aa	Known RBP	12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	ARMCX2	Q7L311	632 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	ALYREF	Q86V81	257 aa	Known RBP	12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	CCDC144CP	Q8IYA2	1237 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	TRERF1	Q96PN7	1200 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	NOC4L	Q9BVI4	516 aa	Known RBP	12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	TRPV6	Q9H1D0	765 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	WNT8A	Q9H1J5	351 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	RWDD1	Q9H446	243 aa	Predicted RBP	12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	ACAD9	Q9H845	621 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	C11orf16	Q9NQ32	467 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	SCUBE2	Q9NQ36	999 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	PRR12	Q9ULL5	1215 aa		12.48	□□□□□ -0.41
HMGN1-215	ENST00000485550	TANC1	Q9C0D5	1861 aa		12.47	□□□□□ -0.41
HMGN1-215	ENST00000485550	SOWAHB	A6NEL2	793 aa		12.47	□□□□□ -0.41
HMGN1-215	ENST00000485550	TLL1	O43897	1013 aa		12.47	□□□□□ -0.41
HMGN1-215	ENST00000485550	ORC4	O43929	436 aa		12.47	□□□□□ -0.41
HMGN1-215	ENST00000485550	B4GALT4	O60513	344 aa		12.47	□□□□□ -0.41
HMGN1-215	ENST00000485550	CA3	P07451	260 aa		12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms