RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 ALAS1P13196 640 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 GCFC2P16383 781 aaKnown RBP9.44□□□□□ -0.9
SYNE1-225ENST00000481502 C1QTNF8P60827 252 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 RESTQ13127 1097 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 IRF5Q13568 498 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 NONOQ15233 471 aaKnown RBP eCLIP9.44□□□□□ -0.9
SYNE1-225ENST00000481502 CSPP1Q1MSJ5 1256 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 CYP4F22Q6NT55 531 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 CCDC174Q6PII3 467 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 C17orf99Q6UX52 265 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 MPHOSPH6Q99547 160 aaKnown RBP9.44□□□□□ -0.9
SYNE1-225ENST00000481502 SCAND2PQ9GZW5 306 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-225ENST00000481502 RNF146Q9NTX7 359 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 BTBD7Q9P203 1132 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 ADD3Q9UEY8 706 aaKnown RBP9.44□□□□□ -0.9
SYNE1-225ENST00000481502 PCDHA6Q9UN73 950 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 CEP131Q9UPN4 1083 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 DIS3Q9Y2L1 958 aaKnown RBP9.44□□□□□ -0.9
SYNE1-225ENST00000481502 ZDHHC9Q9Y397 364 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 PCDHA8Q9Y5H6 950 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 ADGRA2Q96PE1 1338 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 LAD1O00515 517 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 OPLAHO14841 1288 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 MAFGO15525 162 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 CNMDO75829 334 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 GNRH1P01148 92 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 CYP2C8P10632 490 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 MAP2K1Q02750 393 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-225ENST00000481502 KCTD2Q14681 263 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 ARHGEF6Q15052 776 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 USH1GQ495M9 461 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 MYSM1Q5VVJ2 828 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 MCTP1Q6DN14 999 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 PPP4R3AQ6IN85 833 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 POTEEQ6S8J3 1075 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 RNF207Q6ZRF8 634 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 PAXIP1Q6ZW49 1069 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-225ENST00000481502 MSL3Q8N5Y2 521 aaKnown RBP9.43□□□□□ -0.9
SYNE1-225ENST00000481502 CRYGNQ8WXF5 182 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 PIBF1Q8WXW3 757 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 SHISA4Q96DD7 197 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 GBP4Q96PP9 640 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 IWS1Q96ST2 819 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 MOV10L1Q9BXT6 1211 aaKnown RBP9.43□□□□□ -0.9
SYNE1-225ENST00000481502 TXNRD2Q9NNW7 524 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.43□□□□□ -0.9
SYNE1-225ENST00000481502 POLR3EQ9NVU0 708 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 SLC5A4Q9NY91 659 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 KCNJ14Q9UNX9 436 aa9.43□□□□□ -0.9
SYNE1-225ENST00000481502 FRMPD4Q14CM0 1322 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 CYP3A7-CYP3A51PA0A087WV96 503 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 PPFIA3O75145 1194 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 CFBP00751 764 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 FCER1AP12319 257 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 ERCC3P19447 782 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 PTMSP20962 102 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 CYP3A7P24462 503 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 CIITAP33076 1130 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 SREBF1P36956 1147 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 VEGFBP49765 207 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 RPS6P62753 249 aaKnown RBP9.42□□□□□ -0.9
SYNE1-225ENST00000481502 KRT85P78386 507 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 MKRN3Q13064 507 aaKnown RBP9.42□□□□□ -0.9
SYNE1-225ENST00000481502 MKRN4PQ13434 485 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-225ENST00000481502 PLS1Q14651 629 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 Q3C1V9 767 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 ZNF467Q7Z7K2 595 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-225ENST00000481502 NEK8Q86SG6 692 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 CCAR1Q8IX12 1150 aaKnown RBP9.42□□□□□ -0.9
SYNE1-225ENST00000481502 ANKRD35Q8N283 1001 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 SYTL5Q8TDW5 730 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-225ENST00000481502 NSUN6Q8TEA1 469 aaKnown RBP9.42□□□□□ -0.9
SYNE1-225ENST00000481502 CYP39A1Q9NYL5 469 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-225ENST00000481502 RIPK3Q9Y572 518 aa9.42□□□□□ -0.9
SYNE1-225ENST00000481502 RPTORQ8N122 1335 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 DNAJC25-GNG10A0A024R161 153 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 SLC15A5A6NIM6 579 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 TBX3O15119 743 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 YEATS4O95619 227 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 HOXC6P09630 235 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 NASPP49321 788 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-225ENST00000481502 GUCY1B3Q02153 619 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 NR5A1Q13285 461 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 PKP1Q13835 747 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 ARL6IP4Q66PJ3 421 aaKnown RBP9.41□□□□□ -0.9
SYNE1-225ENST00000481502 USP17L6PQ6QN14 398 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 NIPA1Q7RTP0 329 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 NCAPG2Q86XI2 1143 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 ANKRD13CQ8N6S4 541 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 JMYQ8N9B5 988 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 TNPO1Q92973 898 aaKnown RBP9.41□□□□□ -0.9
SYNE1-225ENST00000481502 MBOAT7Q96N66 472 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 PAGR1Q9BTK6 254 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 ANO3Q9BYT9 981 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 A1CFQ9NQ94 594 aaKnown RBP9.41□□□□□ -0.9
SYNE1-225ENST00000481502 GJB4Q9NTQ9 266 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 RTEL1Q9NZ71 1219 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 IVNS1ABPQ9Y6Y0 642 aa9.41□□□□□ -0.9
SYNE1-225ENST00000481502 THSD7BQ9C0I4 1608 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms